RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 OSER1Q9NX31 292 aa14.46□□□□□ -0.09
SHMT2-219ENST00000555563 CFAP97Q9P2B7 532 aa14.46□□□□□ -0.09
SHMT2-219ENST00000555563 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.46□□□□□ -0.09
SHMT2-219ENST00000555563 USP3Q9Y6I4 520 aa14.46□□□□□ -0.09
SHMT2-219ENST00000555563 XPO1O14980 1071 aaKnown RBP14.45□□□□□ -0.1
SHMT2-219ENST00000555563 KRT5P13647 590 aa14.45□□□□□ -0.1
SHMT2-219ENST00000555563 EEF1GP26641 437 aaKnown RBP14.45□□□□□ -0.1
SHMT2-219ENST00000555563 PON1P27169 355 aa14.45□□□□□ -0.1
SHMT2-219ENST00000555563 FZD5Q13467 585 aa14.45□□□□□ -0.1
SHMT2-219ENST00000555563 EML3Q32P44 896 aa14.45□□□□□ -0.1
SHMT2-219ENST00000555563 VWA3BQ502W6 1294 aa14.45□□□□□ -0.1
SHMT2-219ENST00000555563 PKDCCQ504Y2 493 aa14.45□□□□□ -0.1
SHMT2-219ENST00000555563 RAB41Q5JT25 222 aa14.45□□□□□ -0.1
SHMT2-219ENST00000555563 C1orf228Q6PIY5 440 aa14.45□□□□□ -0.1
SHMT2-219ENST00000555563 LCLAT1Q6UWP7 414 aa14.45□□□□□ -0.1
SHMT2-219ENST00000555563 SCD5Q86SK9 330 aa14.45□□□□□ -0.1
SHMT2-219ENST00000555563 DDX42Q86XP3 938 aaKnown RBP eCLIP14.45□□□□□ -0.1
SHMT2-219ENST00000555563 UBA3Q8TBC4 463 aa14.45□□□□□ -0.1
SHMT2-219ENST00000555563 ATP2A3Q93084 1043 aa14.45□□□□□ -0.1
SHMT2-219ENST00000555563 CLDN23Q96B33 292 aa14.45□□□□□ -0.1
SHMT2-219ENST00000555563 UBXN6Q9BZV1 441 aa14.45□□□□□ -0.1
SHMT2-219ENST00000555563 NDST4Q9H3R1 872 aa14.45□□□□□ -0.1
SHMT2-219ENST00000555563 SIX2Q9NPC8 291 aa14.45□□□□□ -0.1
SHMT2-219ENST00000555563 ANO10Q9NW15 660 aa14.45□□□□□ -0.1
SHMT2-219ENST00000555563 APEX2Q9UBZ4 518 aa14.45□□□□□ -0.1
SHMT2-219ENST00000555563 AJAP1Q9UKB5 411 aaPredicted RBP14.45□□□□□ -0.1
SHMT2-219ENST00000555563 KIAA1257Q9ULG3 409 aa14.45□□□□□ -0.1
SHMT2-219ENST00000555563 CNTN6Q9UQ52 1028 aa14.45□□□□□ -0.1
SHMT2-219ENST00000555563 H0Y858 1186 aa14.44□□□□□ -0.1
SHMT2-219ENST00000555563 M0QYV0 167 aa14.44□□□□□ -0.1
SHMT2-219ENST00000555563 SETSIPP0DME0 302 aa14.44□□□□□ -0.1
SHMT2-219ENST00000555563 RPS9P46781 194 aaKnown RBP14.44□□□□□ -0.1
SHMT2-219ENST00000555563 PLA2G4AP47712 749 aa14.44□□□□□ -0.1
SHMT2-219ENST00000555563 TKTL1P51854 596 aa14.44□□□□□ -0.1
SHMT2-219ENST00000555563 MFAP3P55082 362 aa14.44□□□□□ -0.1
SHMT2-219ENST00000555563 ADIGQ0VDE8 80 aa14.44□□□□□ -0.1
SHMT2-219ENST00000555563 ANGPT1Q15389 498 aa14.44□□□□□ -0.1
SHMT2-219ENST00000555563 TCP11X2Q5H9J9 407 aa14.44□□□□□ -0.1
SHMT2-219ENST00000555563 CDKAL1Q5VV42 579 aa14.44□□□□□ -0.1
SHMT2-219ENST00000555563 ENOSF1Q7L5Y1 443 aa14.44□□□□□ -0.1
SHMT2-219ENST00000555563 CPA6Q8N4T0 437 aa14.44□□□□□ -0.1
SHMT2-219ENST00000555563 ECT2Q9H8V3 914 aa14.44□□□□□ -0.1
SHMT2-219ENST00000555563 FAM86C1Q9NVL1 165 aa14.44□□□□□ -0.1
SHMT2-219ENST00000555563 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.44□□□□□ -0.1
SHMT2-219ENST00000555563 TAB2Q9NYJ8 693 aa14.44□□□□□ -0.1
SHMT2-219ENST00000555563 NAGPAQ9UK23 515 aa14.44□□□□□ -0.1
SHMT2-219ENST00000555563 USP34Q70CQ2 3546 aa14.43□□□□□ -0.1
SHMT2-219ENST00000555563 BECN2A8MW95 431 aa14.43□□□□□ -0.1
SHMT2-219ENST00000555563 PES1O00541 588 aaKnown RBP14.43□□□□□ -0.1
SHMT2-219ENST00000555563 NCAM2O15394 837 aa14.43□□□□□ -0.1
SHMT2-219ENST00000555563 TBX18O95935 607 aa14.43□□□□□ -0.1
SHMT2-219ENST00000555563 CHRNB1P11230 501 aa14.43□□□□□ -0.1
SHMT2-219ENST00000555563 RARGP13631 454 aa14.43□□□□□ -0.1
SHMT2-219ENST00000555563 MAGEA9P43362 315 aa14.43□□□□□ -0.1
SHMT2-219ENST00000555563 TYRO3Q06418 890 aa14.43□□□□□ -0.1
SHMT2-219ENST00000555563 PON2Q15165 354 aa14.43□□□□□ -0.1
SHMT2-219ENST00000555563 STILQ15468 1287 aa14.43□□□□□ -0.1
SHMT2-219ENST00000555563 CNGA2Q16280 664 aa14.43□□□□□ -0.1
SHMT2-219ENST00000555563 ARHGAP44Q17R89 818 aa14.43□□□□□ -0.1
SHMT2-219ENST00000555563 NAIF1Q69YI7 327 aaPredicted RBP14.43□□□□□ -0.1
SHMT2-219ENST00000555563 CAVIN1Q6NZI2 390 aaKnown RBP14.43□□□□□ -0.1
SHMT2-219ENST00000555563 BHLHA9Q7RTU4 235 aa14.43□□□□□ -0.1
SHMT2-219ENST00000555563 KIAA1958Q8N8K9 716 aa14.43□□□□□ -0.1
SHMT2-219ENST00000555563 SHC3Q92529 594 aa14.43□□□□□ -0.1
SHMT2-219ENST00000555563 SECISBP2LQ93073 1101 aaKnown RBP14.43□□□□□ -0.1
SHMT2-219ENST00000555563 WBP2Q969T9 261 aa14.43□□□□□ -0.1
SHMT2-219ENST00000555563 FAM81BQ96LP2 452 aa14.43□□□□□ -0.1
SHMT2-219ENST00000555563 ULBP1Q9BZM6 244 aa14.43□□□□□ -0.1
SHMT2-219ENST00000555563 LINC00597Q9H2U6 94 aa14.43□□□□□ -0.1
SHMT2-219ENST00000555563 CHRDQ9H2X0 955 aa14.43□□□□□ -0.1
SHMT2-219ENST00000555563 RBM12Q9NTZ6 932 aaKnown RBP14.43□□□□□ -0.1
SHMT2-219ENST00000555563 SPATA6Q9NWH7 488 aaPredicted RBP14.43□□□□□ -0.1
SHMT2-219ENST00000555563 NUDT5Q9UKK9 219 aa14.43□□□□□ -0.1
SHMT2-219ENST00000555563 F5P12259 2224 aa14.42□□□□□ -0.1
SHMT2-219ENST00000555563 MDM4O15151 490 aa14.42□□□□□ -0.1
SHMT2-219ENST00000555563 GABBR2O75899 941 aa14.42□□□□□ -0.1
SHMT2-219ENST00000555563 NFATC1O95644 943 aa14.42□□□□□ -0.1
SHMT2-219ENST00000555563 ZBED1O96006 694 aa14.42□□□□□ -0.1
SHMT2-219ENST00000555563 CYP17A1P05093 508 aa14.42□□□□□ -0.1
SHMT2-219ENST00000555563 IRF1P10914 325 aa14.42□□□□□ -0.1
SHMT2-219ENST00000555563 GJA4P35212 333 aa14.42□□□□□ -0.1
SHMT2-219ENST00000555563 ATP5C1P36542 298 aaKnown RBP14.42□□□□□ -0.1
SHMT2-219ENST00000555563 PSEN1P49768 467 aa14.42□□□□□ -0.1
SHMT2-219ENST00000555563 MYL5Q02045 173 aa14.42□□□□□ -0.1
SHMT2-219ENST00000555563 KRT31Q15323 416 aa14.42□□□□□ -0.1
SHMT2-219ENST00000555563 C10orf120Q5SQS8 335 aa14.42□□□□□ -0.1
SHMT2-219ENST00000555563 DPY19L2P1Q6NXN4 242 aa14.42□□□□□ -0.1
SHMT2-219ENST00000555563 KLHDC10Q6PID8 442 aa14.42□□□□□ -0.1
SHMT2-219ENST00000555563 C1orf210Q8IVY1 113 aa14.42□□□□□ -0.1
SHMT2-219ENST00000555563 SIX6OS1Q8N1H7 587 aa14.42□□□□□ -0.1
SHMT2-219ENST00000555563 KCTD13Q8WZ19 329 aa14.42□□□□□ -0.1
SHMT2-219ENST00000555563 NDRG1Q92597 394 aaKnown RBP14.42□□□□□ -0.1
SHMT2-219ENST00000555563 ATOH1Q92858 354 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-219ENST00000555563 KLF16Q9BXK1 252 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-219ENST00000555563 LMAN1LQ9HAT1 526 aa14.42□□□□□ -0.1
SHMT2-219ENST00000555563 LRRC4Q9HBW1 653 aa14.42□□□□□ -0.1
SHMT2-219ENST00000555563 ACP6Q9NPH0 428 aa14.42□□□□□ -0.1
SHMT2-219ENST00000555563 FANCLQ9NW38 375 aa14.42□□□□□ -0.1
SHMT2-219ENST00000555563 CLIC5Q9NZA1 410 aa14.42□□□□□ -0.1
SHMT2-219ENST00000555563 DNAJC12Q9UKB3 198 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms