RNA–Protein interactions for RNA: ENST00000555405.5

NEK9-205, Transcript of NIMA related kinase 9, humanhuman

TSL 1 (best)

Gene NEK9, Length 3,357 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-205ENST00000555405 CDC23Q9UJX2 597 aa10.68□□□□□ -0.7
NEK9-205ENST00000555405 A0A0A6YYK5 440 aaPredicted RBP10.67□□□□□ -0.7
NEK9-205ENST00000555405 A0A1W2PQH9 124 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 FGGP02679 453 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 LTFP02788 710 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 CDH5P33151 784 aaPredicted RBP10.67□□□□□ -0.7
NEK9-205ENST00000555405 C2orf54Q08AI8 447 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 GPM6BQ13491 265 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 EFHC1Q5JVL4 640 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 OLFML1Q6UWY5 402 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 LRRC57Q8N9N7 239 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 GDPD5Q8WTR4 605 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 TBCBQ99426 244 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 SLITRK6Q9H5Y7 841 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 DHX35Q9H5Z1 703 aaKnown RBP10.67□□□□□ -0.7
NEK9-205ENST00000555405 KCND1Q9NSA2 647 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 GMIPQ9P107 970 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 MSRAQ9UJ68 235 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 YBX2Q9Y2T7 364 aaKnown RBP10.67□□□□□ -0.7
NEK9-205ENST00000555405 MSI1O43347 362 aaKnown RBP10.67□□□□□ -0.7
NEK9-205ENST00000555405 MIPP30301 263 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 PLA2G4AP47712 749 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 TWF1Q12792 350 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 EFEMP1Q12805 493 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 HADHQ16836 314 aaKnown RBP10.67□□□□□ -0.7
NEK9-205ENST00000555405 TRNP1Q6NT89 227 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 NUP93Q8N1F7 819 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 TAB3Q8N5C8 712 aaPredicted RBP10.67□□□□□ -0.7
NEK9-205ENST00000555405 KCTD6Q8NC69 237 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 SLC22A17Q8WUG5 538 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 PIK3R5Q8WYR1 880 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 MCRS1Q96EZ8 462 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 SMPD4Q9NXE4 827 aa10.67□□□□□ -0.7
NEK9-205ENST00000555405 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.67□□□□□ -0.7
NEK9-205ENST00000555405 CREB3O43889 395 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 PYGMP11217 842 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 DNAJB1P25685 340 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 YWHAQP27348 245 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 DAOAP59103 153 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 DEUP1Q05D60 604 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 KRT81Q14533 505 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 C10orf120Q5SQS8 335 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 SEL1L2Q5TEA6 688 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 DDX53Q86TM3 631 aaKnown RBP10.66□□□□□ -0.7
NEK9-205ENST00000555405 SPPL2BQ8TCT7 592 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 LRRN4Q8WUT4 740 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 MTRRQ9UBK8 725 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 CTAGE15A4D2H0 777 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 PDE2AO00408 941 aaPredicted RBP10.66□□□□□ -0.7
NEK9-205ENST00000555405 CCL16O15467 120 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 RFPL2O75678 378 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 ZRANB2O95218 330 aaKnown RBP eCLIP10.66□□□□□ -0.7
NEK9-205ENST00000555405 CTAGE8P0CG41 777 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 IRF1P10914 325 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 CAPN2P17655 700 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 RWDD2BP57060 319 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 ZNF252P-AS1Q0IIN9 211 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 CCDC14Q49A88 953 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 PPP1R2P3Q6NXS1 205 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 CTAGE6Q86UF2 777 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 CTAGE4Q8IX94 777 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 ZNF461Q8TAF7 563 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 PBX4Q9BYU1 374 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 SNX10Q9Y5X0 201 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 ZMYND10O75800 440 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 TCP1P17987 556 aaKnown RBP10.66□□□□□ -0.7
NEK9-205ENST00000555405 CTNNA2P26232 953 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 CDH6P55285 790 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 HTRA4P83105 476 aaPredicted RBP10.66□□□□□ -0.7
NEK9-205ENST00000555405 DSG1Q02413 1049 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 PIGHQ14442 188 aaPredicted RBP10.66□□□□□ -0.7
NEK9-205ENST00000555405 VEPH1Q14D04 833 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 ZC3H12AQ5D1E8 599 aaKnown RBP10.66□□□□□ -0.7
NEK9-205ENST00000555405 SPPL3Q8TCT6 385 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 BHMTQ93088 406 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 CNPY3Q9BT09 278 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 NMUR1Q9HB89 426 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 RC3H2Q9HBD1 1191 aaKnown RBP10.66□□□□□ -0.7
NEK9-205ENST00000555405 CHST7Q9NS84 486 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 C5orf42Q9H799 3197 aa10.66□□□□□ -0.7
NEK9-205ENST00000555405 KRIT1O00522 736 aa10.65□□□□□ -0.7
NEK9-205ENST00000555405 LRCH4O75427 683 aa10.65□□□□□ -0.7
NEK9-205ENST00000555405 SLU7O95391 586 aaKnown RBP10.65□□□□□ -0.7
NEK9-205ENST00000555405 MYL4P12829 197 aa10.65□□□□□ -0.7
NEK9-205ENST00000555405 IL1R2P27930 398 aa10.65□□□□□ -0.7
NEK9-205ENST00000555405 YWHAGP61981 247 aaKnown RBP eCLIP10.65□□□□□ -0.7
NEK9-205ENST00000555405 RPL10AP62906 217 aaKnown RBP10.65□□□□□ -0.7
NEK9-205ENST00000555405 MRPL58Q14197 206 aaKnown RBP10.65□□□□□ -0.7
NEK9-205ENST00000555405 RHOT1Q8IXI2 618 aa10.65□□□□□ -0.7
NEK9-205ENST00000555405 C12orf76Q8N812 135 aaPredicted RBP10.65□□□□□ -0.7
NEK9-205ENST00000555405 TGS1Q96RS0 853 aaKnown RBP10.65□□□□□ -0.7
NEK9-205ENST00000555405 TRIM31Q9BZY9 425 aa10.65□□□□□ -0.7
NEK9-205ENST00000555405 POPDC2Q9HBU9 364 aa10.65□□□□□ -0.7
NEK9-205ENST00000555405 TLR9Q9NR96 1032 aa10.65□□□□□ -0.7
NEK9-205ENST00000555405 RASAL2Q9UJF2 1139 aa10.65□□□□□ -0.7
NEK9-205ENST00000555405 USP18Q9UMW8 372 aa10.65□□□□□ -0.7
NEK9-205ENST00000555405 PRUNE2Q8WUY3 3088 aa10.65□□□□□ -0.7
NEK9-205ENST00000555405 C2CD4BA6NLJ0 364 aa10.65□□□□□ -0.7
NEK9-205ENST00000555405 DAPK3O43293 454 aa10.65□□□□□ -0.7
NEK9-205ENST00000555405 TGM5O43548 720 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms