RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 ZNF280BQ86YH2 543 aa15.27■□□□□ 0.04
SHMT2-208ENST00000553868 PDCL2Q8N4E4 241 aa15.27■□□□□ 0.04
SHMT2-208ENST00000553868 RNF10Q8N5U6 811 aaKnown RBP15.27■□□□□ 0.04
SHMT2-208ENST00000553868 CELF5Q8N6W0 485 aaKnown RBP15.27■□□□□ 0.04
SHMT2-208ENST00000553868 MSANTD4Q8NCY6 345 aa15.27■□□□□ 0.04
SHMT2-208ENST00000553868 OLIG1Q8TAK6 271 aa15.27■□□□□ 0.04
SHMT2-208ENST00000553868 SUSD3Q96L08 255 aa15.27■□□□□ 0.04
SHMT2-208ENST00000553868 TMEM121BQ9BXQ6 578 aaPredicted RBP15.27■□□□□ 0.04
SHMT2-208ENST00000553868 LHX5Q9H2C1 402 aa15.27■□□□□ 0.04
SHMT2-208ENST00000553868 GUCA1BQ9UMX6 200 aa15.27■□□□□ 0.04
SHMT2-208ENST00000553868 A0A0A6YYK5 440 aaPredicted RBP15.26■□□□□ 0.03
SHMT2-208ENST00000553868 TMCO5BA8MYB1 307 aa15.26■□□□□ 0.03
SHMT2-208ENST00000553868 M0QZQ0 153 aa15.26■□□□□ 0.03
SHMT2-208ENST00000553868 TEX28O15482 410 aa15.26■□□□□ 0.03
SHMT2-208ENST00000553868 DDHD2O94830 711 aa15.26■□□□□ 0.03
SHMT2-208ENST00000553868 TOP3BO95985 862 aaKnown RBP15.26■□□□□ 0.03
SHMT2-208ENST00000553868 CYP1A1P04798 512 aaPredicted RBP15.26■□□□□ 0.03
SHMT2-208ENST00000553868 ALDH2P05091 517 aa15.26■□□□□ 0.03
SHMT2-208ENST00000553868 MYBL1P10243 752 aa15.26■□□□□ 0.03
SHMT2-208ENST00000553868 TNNT1P13805 278 aa15.26■□□□□ 0.03
SHMT2-208ENST00000553868 TYMPP19971 482 aa15.26■□□□□ 0.03
SHMT2-208ENST00000553868 PCSK1P29120 753 aa15.26■□□□□ 0.03
SHMT2-208ENST00000553868 MAGEA9P43362 315 aa15.26■□□□□ 0.03
SHMT2-208ENST00000553868 GALCP54803 685 aa15.26■□□□□ 0.03
SHMT2-208ENST00000553868 ETF1P62495 437 aaKnown RBP15.26■□□□□ 0.03
SHMT2-208ENST00000553868 SIM2Q14190 667 aaPredicted RBP15.26■□□□□ 0.03
SHMT2-208ENST00000553868 CNGA2Q16280 664 aa15.26■□□□□ 0.03
SHMT2-208ENST00000553868 WSCD1Q658N2 575 aa15.26■□□□□ 0.03
SHMT2-208ENST00000553868 TAS1R1Q7RTX1 841 aa15.26■□□□□ 0.03
SHMT2-208ENST00000553868 CRYBG2Q8N1P7 616 aa15.26■□□□□ 0.03
SHMT2-208ENST00000553868 KBTBD7Q8WVZ9 684 aa15.26■□□□□ 0.03
SHMT2-208ENST00000553868 NOX5Q96PH1 765 aa15.26■□□□□ 0.03
SHMT2-208ENST00000553868 ALS2CR12Q96Q35 445 aa15.26■□□□□ 0.03
SHMT2-208ENST00000553868 PCDHB18PQ96TA0 734 aa15.26■□□□□ 0.03
SHMT2-208ENST00000553868 FAM126AQ9BYI3 521 aaPredicted RBP15.26■□□□□ 0.03
SHMT2-208ENST00000553868 MRPL17Q9NRX2 175 aaKnown RBP15.26■□□□□ 0.03
SHMT2-208ENST00000553868 HMGXB4Q9UGU5 601 aa15.26■□□□□ 0.03
SHMT2-208ENST00000553868 PCDHB8Q9UN66 801 aa15.26■□□□□ 0.03
SHMT2-208ENST00000553868 MAST4O15021 2626 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 GABRDO14764 452 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 HRO43593 1189 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 TADA2AO75478 443 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 KCNK5O95279 499 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 GLUD1P00367 558 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 CYP11A1P05108 521 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 UNGP13051 313 aaPredicted RBP15.25■□□□□ 0.03
SHMT2-208ENST00000553868 NAP1L1P55209 391 aaKnown RBP15.25■□□□□ 0.03
SHMT2-208ENST00000553868 GNG11P61952 73 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 NOMO3P69849 1222 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 NTHL1P78549 312 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 CENPCQ03188 943 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 ELAVL2Q12926 359 aaKnown RBP15.25■□□□□ 0.03
SHMT2-208ENST00000553868 AASDHQ4L235 1098 aaPredicted RBP15.25■□□□□ 0.03
SHMT2-208ENST00000553868 LIN9Q5TKA1 542 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 NAA35Q5VZE5 725 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 ARHGAP17Q68EM7 881 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 RHOT2Q8IXI1 618 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 THEM5Q8N1Q8 247 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 C3orf58Q8NDZ4 430 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 TFAP2BQ92481 460 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 VCPIP1Q96JH7 1222 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 TWNKQ96RR1 684 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 KXD1Q9BQD3 176 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 PAAF1Q9BRP4 392 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 RHOBTB2Q9BYZ6 727 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 LACRTQ9GZZ8 138 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 MIS12Q9H081 205 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 CACNG4Q9UBN1 327 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 HESX1Q9UBX0 185 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.25■□□□□ 0.03
SHMT2-208ENST00000553868 FAN1Q9Y2M0 1017 aa15.25■□□□□ 0.03
SHMT2-208ENST00000553868 NCANO14594 1321 aa15.24■□□□□ 0.03
SHMT2-208ENST00000553868 TDRD15B5MCY1 1934 aaKnown RBP15.24■□□□□ 0.03
SHMT2-208ENST00000553868 ITPR1Q14643 2758 aa15.24■□□□□ 0.03
SHMT2-208ENST00000553868 RCCD1A6NED2 376 aa15.24■□□□□ 0.03
SHMT2-208ENST00000553868 SHISA7A6NL88 538 aa15.24■□□□□ 0.03
SHMT2-208ENST00000553868 TAF4O00268 1085 aa15.24■□□□□ 0.03
SHMT2-208ENST00000553868 O00370 1275 aa15.24■□□□□ 0.03
SHMT2-208ENST00000553868 CALCAP01258 141 aa15.24■□□□□ 0.03
SHMT2-208ENST00000553868 SETSIPP0DME0 302 aa15.24■□□□□ 0.03
SHMT2-208ENST00000553868 CDH5P33151 784 aaPredicted RBP15.24■□□□□ 0.03
SHMT2-208ENST00000553868 RPS9P46781 194 aaKnown RBP15.24■□□□□ 0.03
SHMT2-208ENST00000553868 SNX16P57768 344 aa15.24■□□□□ 0.03
SHMT2-208ENST00000553868 C1QBPQ07021 282 aaKnown RBP15.24■□□□□ 0.03
SHMT2-208ENST00000553868 FOXC1Q12948 553 aa15.24■□□□□ 0.03
SHMT2-208ENST00000553868 PSAPL1Q6NUJ1 521 aa15.24■□□□□ 0.03
SHMT2-208ENST00000553868 LCLAT1Q6UWP7 414 aa15.24■□□□□ 0.03
SHMT2-208ENST00000553868 ACOT1Q86TX2 421 aa15.24■□□□□ 0.03
SHMT2-208ENST00000553868 PALB2Q86YC2 1186 aa15.24■□□□□ 0.03
SHMT2-208ENST00000553868 PHF13Q86YI8 300 aaPredicted RBP15.24■□□□□ 0.03
SHMT2-208ENST00000553868 PASD1Q8IV76 773 aa15.24■□□□□ 0.03
SHMT2-208ENST00000553868 TRIM58Q8NG06 486 aa15.24■□□□□ 0.03
SHMT2-208ENST00000553868 RFFLQ8WZ73 363 aa15.24■□□□□ 0.03
SHMT2-208ENST00000553868 CYFIP2Q96F07 1278 aa15.24■□□□□ 0.03
SHMT2-208ENST00000553868 DDX43Q9NXZ2 648 aaKnown RBP15.24■□□□□ 0.03
SHMT2-208ENST00000553868 TAS2R14Q9NYV8 317 aa15.24■□□□□ 0.03
SHMT2-208ENST00000553868 GTF3C4Q9UKN8 822 aa15.24■□□□□ 0.03
SHMT2-208ENST00000553868 CDH9Q9ULB4 789 aa15.24■□□□□ 0.03
SHMT2-208ENST00000553868 PRG3Q9Y2Y8 225 aaPredicted RBP15.24■□□□□ 0.03
SHMT2-208ENST00000553868 SF3B1O75533 1304 aaKnown RBP eCLIP15.23■□□□□ 0.035e-8■■■■■ 37.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms