RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 OLFM3Q96PB7 478 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 PPP1R16BQ96T49 567 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 INO80BQ9C086 356 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-207ENST00000553837 CDT1Q9H211 546 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 HMGXB4Q9UGU5 601 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 EVPLQ92817 2033 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 PCNTO95613 3336 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 NFICP08651 508 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 ZNF24P17028 368 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 MAGEA10P43363 369 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-207ENST00000553837 MPP3Q13368 585 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 TDRPQ86YL5 185 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 SULF1Q8IWU6 871 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 ARHGAP24Q8N264 748 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 JOSD2Q8TAC2 188 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 DTX3LQ8TDB6 740 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 ZNF75CPQ92670 426 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-207ENST00000553837 DCPSQ96C86 337 aaKnown RBP12.76□□□□□ -0.37
SHMT2-207ENST00000553837 PTCD3Q96EY7 689 aaKnown RBP12.76□□□□□ -0.37
SHMT2-207ENST00000553837 CFAP57Q96MR6 1250 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 TWNKQ96RR1 684 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 NPHS2Q9NP85 383 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 ADARB2Q9NS39 739 aaKnown RBP12.76□□□□□ -0.37
SHMT2-207ENST00000553837 KRT82Q9NSB4 513 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 PCDHGC3Q9UN70 934 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 AGTPBP1Q9UPW5 1226 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 hCG_1818297A0A087WSY0 165 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 EXOC1LA0A1B0GW35 172 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 C3orf70A6NLC5 250 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-207ENST00000553837 GOLGA8SH3BPF8 625 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 TPD52L2O43399 206 aaKnown RBP12.76□□□□□ -0.37
SHMT2-207ENST00000553837 B4GALT4O60513 344 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 TMCC1O94876 653 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 HAUS5O94927 633 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 IL1R2P27930 398 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 RFC1P35251 1148 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-207ENST00000553837 DCUN1D2Q6PH85 259 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 ERO1BQ86YB8 467 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 C1orf127Q8N9H9 656 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 CXorf38Q8TB03 319 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 TTC25Q96NG3 672 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 MMP19Q99542 508 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 FOXP3Q9BZS1 431 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 C10orf88Q9H8K7 445 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 IFT122Q9HBG6 1241 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 SAE1Q9UBE0 346 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-207ENST00000553837 PPME1Q9Y570 386 aa12.76□□□□□ -0.37
SHMT2-207ENST00000553837 CFAP69A5D8W1 941 aa12.75□□□□□ -0.37
SHMT2-207ENST00000553837 SLC25A27O95847 323 aa12.75□□□□□ -0.37
SHMT2-207ENST00000553837 ZCCHC18P0CG32 403 aa12.75□□□□□ -0.37
SHMT2-207ENST00000553837 TXNP10599 105 aaKnown RBP12.75□□□□□ -0.37
SHMT2-207ENST00000553837 KRT15P19012 456 aa12.75□□□□□ -0.37
SHMT2-207ENST00000553837 CA4P22748 312 aa12.75□□□□□ -0.37
SHMT2-207ENST00000553837 EIF4BP23588 611 aaKnown RBP12.75□□□□□ -0.37
SHMT2-207ENST00000553837 RPA3P35244 121 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-207ENST00000553837 CDKN2BP42772 138 aa12.75□□□□□ -0.37
SHMT2-207ENST00000553837 IREB2P48200 963 aaKnown RBP12.75□□□□□ -0.37
SHMT2-207ENST00000553837 CDK7P50613 346 aa12.75□□□□□ -0.37
SHMT2-207ENST00000553837 IGBP1P78318 339 aa12.75□□□□□ -0.37
SHMT2-207ENST00000553837 MAP7Q14244 749 aa12.75□□□□□ -0.37
SHMT2-207ENST00000553837 ZFYVE27Q5T4F4 411 aa12.75□□□□□ -0.37
SHMT2-207ENST00000553837 WDR78Q5VTH9 848 aa12.75□□□□□ -0.37
SHMT2-207ENST00000553837 GSTA5Q7RTV2 222 aa12.75□□□□□ -0.37
SHMT2-207ENST00000553837 CCDC89Q8N998 374 aa12.75□□□□□ -0.37
SHMT2-207ENST00000553837 SMYD1Q8NB12 490 aa12.75□□□□□ -0.37
SHMT2-207ENST00000553837 DDX50Q9BQ39 737 aaKnown RBP12.75□□□□□ -0.37
SHMT2-207ENST00000553837 PHACTR1Q9C0D0 580 aa12.75□□□□□ -0.37
SHMT2-207ENST00000553837 C2orf40Q9H1Z8 148 aa12.75□□□□□ -0.37
SHMT2-207ENST00000553837 SMYD3Q9H7B4 428 aa12.75□□□□□ -0.37
SHMT2-207ENST00000553837 GRID1Q9ULK0 1009 aa12.75□□□□□ -0.37
SHMT2-207ENST00000553837 KCNH4Q9UQ05 1017 aa12.75□□□□□ -0.37
SHMT2-207ENST00000553837 LACTBL1A8MY62 500 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 CXCL11O14625 94 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 GAS2O43903 313 aaKnown RBP12.74□□□□□ -0.37
SHMT2-207ENST00000553837 C22orf31O95567 290 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 KRT19P08727 400 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 CD19P15391 556 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 MAGEA4P43358 317 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 DSG1Q02413 1049 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 SLC25A11Q02978 314 aaKnown RBP12.74□□□□□ -0.37
SHMT2-207ENST00000553837 FASTKD3Q14CZ7 662 aaKnown RBP12.74□□□□□ -0.37
SHMT2-207ENST00000553837 OASLQ15646 514 aaKnown RBP12.74□□□□□ -0.37
SHMT2-207ENST00000553837 SMTNL2Q2TAL5 461 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 HP1BP3Q5SSJ5 553 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-207ENST00000553837 LRRC38Q5VT99 294 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 PPP1R2P3Q6NXS1 205 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 ST13P4Q8IZP2 240 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-207ENST00000553837 ALLCQ8N6M5 410 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 EMC1Q8N766 993 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 PDCD7Q8N8D1 485 aaKnown RBP12.74□□□□□ -0.37
SHMT2-207ENST00000553837 CPXM1Q96SM3 734 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 BCO2Q9BYV7 579 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 ZNF518BQ9C0D4 1074 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 OCEL1Q9H607 264 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 PREBQ9HCU5 417 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 ARL8BQ9NVJ2 186 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 ITGB1BP2Q9UKP3 347 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 F8W8V4 182 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 TNNC2P02585 160 aa12.74□□□□□ -0.37
SHMT2-207ENST00000553837 GCAP28676 217 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms