RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 TIGD1Q96MW7 591 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 SMOQ99835 787 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 UBXN6Q9BZV1 441 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 GOLPH3LQ9H4A5 285 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 CYLDQ9NQC7 956 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 GMIPQ9P107 970 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 SCML2Q9UQR0 700 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 K7EQS6 105 aa11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 SLC16A3O15427 465 aaKnown RBP11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 TLR5O60602 858 aa11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 CILPO75339 1184 aa11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 KAT7O95251 611 aa11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 TRIM49P0CI25 452 aa11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 TRIM49CP0CI26 452 aa11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 ADH5P11766 374 aa11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 CCDC130P13994 396 aa11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 MXI1P50539 228 aa11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 ATXN1P54253 815 aaKnown RBP11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 LRRC63Q05C16 580 aa11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 SRSF5Q13243 272 aaKnown RBP11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 STIM1Q13586 685 aa11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 USP39Q53GS9 565 aaKnown RBP11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 EOGTQ5NDL2 527 aa11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 ZNF658Q5TYW1 1059 aaPredicted RBP11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 SPOPLQ6IQ16 392 aa11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 PKN3Q6P5Z2 889 aa11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 PRR23CQ6ZRP0 262 aa11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 CLEC20AQ6ZU45 233 aa11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 HTR3DQ70Z44 454 aa11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 TRMT11Q7Z4G4 463 aaKnown RBP11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 FMR1NBQ8N0W7 255 aaPredicted RBP11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 C12orf29Q8N999 325 aa11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 ZMIZ2Q8NF64 920 aa11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 HEXIM2Q96MH2 286 aaKnown RBP11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 PARD6AQ9NPB6 346 aa11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 FAM49BQ9NUQ9 324 aa11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 RAB20Q9NX57 234 aa11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 LSM7Q9UK45 103 aaKnown RBP11.49□□□□□ -0.57
VTI1BP3-201ENST00000550220 SLC30A4O14863 429 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 HOXC11O43248 304 aaPredicted RBP11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 BEST1O76090 585 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 EPN2O95208 641 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 ZNF806P0C7X5 589 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 RALAP11233 206 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 ACO1P21399 889 aaKnown RBP11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 ADORA2BP29275 332 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 PLA2G4AP47712 749 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 YWHAEP62258 255 aaKnown RBP11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 BYSLQ13895 437 aaKnown RBP11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 CRY1Q16526 586 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 C2orf27AQ580R0 203 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 LY6G5CQ5SRR4 150 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 ARHGAP18Q8N392 663 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 C12orf50Q8NA57 414 aaPredicted RBP11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 EZH1Q92800 747 aaPredicted RBP11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 SMARCE1Q969G3 411 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 CHAMP1Q96JM3 812 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 ZFRQ96KR1 1074 aaKnown RBP11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 CNOT6LQ96LI5 555 aaKnown RBP11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 HHIPQ96QV1 700 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 DUSP16Q9BY84 665 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 CCSER2Q9H7U1 834 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 APOBEC3GQ9HC16 384 aaKnown RBP11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 GDPD2Q9HCC8 539 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 METTL14Q9HCE5 456 aaKnown RBP11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 POLMQ9NP87 494 aaPredicted RBP11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 ARHGEF4Q9NR80 690 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 SPHK2Q9NRA0 654 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 WDR35Q9P2L0 1181 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 DEC1Q9P2X7 70 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 DNMT3LQ9UJW3 386 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 MMP17Q9ULZ9 603 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 ZNF510Q9Y2H8 683 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 CACNA1AO00555 2505 aa11.48□□□□□ -0.57
VTI1BP3-201ENST00000550220 TBC1D3BA6NDS4 549 aa11.47□□□□□ -0.57
VTI1BP3-201ENST00000550220 PSMA7O14818 248 aa11.47□□□□□ -0.57
VTI1BP3-201ENST00000550220 ZBTB24O43167 697 aaPredicted RBP11.47□□□□□ -0.57
VTI1BP3-201ENST00000550220 CD58P19256 250 aa11.47□□□□□ -0.57
VTI1BP3-201ENST00000550220 PRCPP42785 496 aa11.47□□□□□ -0.57
VTI1BP3-201ENST00000550220 PXNP49023 591 aaPredicted RBP11.47□□□□□ -0.57
VTI1BP3-201ENST00000550220 KIF11P52732 1056 aa11.47□□□□□ -0.57
VTI1BP3-201ENST00000550220 LIMK1P53667 647 aa11.47□□□□□ -0.57
VTI1BP3-201ENST00000550220 CETN1Q12798 172 aa11.47□□□□□ -0.57
VTI1BP3-201ENST00000550220 ORC1Q13415 861 aa11.47□□□□□ -0.57
VTI1BP3-201ENST00000550220 E2F5Q15329 346 aa11.47□□□□□ -0.57
VTI1BP3-201ENST00000550220 GAB4Q2WGN9 574 aa11.47□□□□□ -0.57
VTI1BP3-201ENST00000550220 PLK5Q496M5 336 aa11.47□□□□□ -0.57
VTI1BP3-201ENST00000550220 NAIF1Q69YI7 327 aaPredicted RBP11.47□□□□□ -0.57
VTI1BP3-201ENST00000550220 CCDC186Q7Z3E2 898 aa11.47□□□□□ -0.57
VTI1BP3-201ENST00000550220 KBTBD6Q86V97 674 aa11.47□□□□□ -0.57
VTI1BP3-201ENST00000550220 RASSF3Q86WH2 238 aa11.47□□□□□ -0.57
VTI1BP3-201ENST00000550220 SPATA20Q8TB22 786 aa11.47□□□□□ -0.57
VTI1BP3-201ENST00000550220 WHAMMQ8TF30 809 aa11.47□□□□□ -0.57
VTI1BP3-201ENST00000550220 TMEM176AQ96HP8 235 aa11.47□□□□□ -0.57
VTI1BP3-201ENST00000550220 DHTKD1Q96HY7 919 aaPredicted RBP11.47□□□□□ -0.57
VTI1BP3-201ENST00000550220 XPO6Q96QU8 1125 aaKnown RBP11.47□□□□□ -0.57
VTI1BP3-201ENST00000550220 TWNKQ96RR1 684 aa11.47□□□□□ -0.57
VTI1BP3-201ENST00000550220 KLF16Q9BXK1 252 aaPredicted RBP11.47□□□□□ -0.57
VTI1BP3-201ENST00000550220 ARRDC1-AS1Q9H2J1 176 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms