RNA–Protein interactions for RNA: ENST00000540846.6

SMAD3-204, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-204ENST00000540846 MAIP1Q8WWC4 291 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 AUTS2Q8WXX7 1259 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 MYLPFQ96A32 169 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 RUNDC3BQ96NL0 473 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 SAMD11Q96NU1 681 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 TGS1Q96RS0 853 aaKnown RBP13.08□□□□□ -0.32
SMAD3-204ENST00000540846 CLSTN3Q9BQT9 956 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 RHOBTB2Q9BYZ6 727 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 NKX2-4Q9H2Z4 354 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 ALG13Q9NP73 1137 aaKnown RBP13.08□□□□□ -0.32
SMAD3-204ENST00000540846 METTL5Q9NRN9 209 aaKnown RBP13.08□□□□□ -0.32
SMAD3-204ENST00000540846 USTQ9Y2C2 406 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 TRIOBPQ9H2D6 2365 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 MYO7AQ13402 2215 aa13.08□□□□□ -0.32
SMAD3-204ENST00000540846 F8VP50 259 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 H7C4K7 107 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 TULP2O00295 520 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 GRM6O15303 877 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 GABBR2O75899 941 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 RARAP10276 462 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 RPL17P18621 184 aaKnown RBP13.07□□□□□ -0.32
SMAD3-204ENST00000540846 FNTAP49354 379 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 CDR1P51861 262 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 ERVFC1P60507 584 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 KRT17Q04695 432 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 TTC27Q6P3X3 843 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 FBXO22Q8NEZ5 403 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 JOSD2Q8TAC2 188 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 STK32AQ8WU08 396 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 RBM41Q96IZ5 413 aaKnown RBP13.07□□□□□ -0.32
SMAD3-204ENST00000540846 SLC4A5Q9BY07 1137 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 OXCT2Q9BYC2 517 aaPredicted RBP13.07□□□□□ -0.32
SMAD3-204ENST00000540846 RAB17Q9H0T7 212 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 PLEKHA4Q9H4M7 779 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 LRRC19Q9H756 370 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 RXFP1Q9HBX9 757 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 HESX1Q9UBX0 185 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 STK39Q9UEW8 545 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 NFU1Q9UMS0 254 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 IRAK3Q9Y616 596 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 MTCL1Q9Y4B5 1905 aaKnown RBP13.07□□□□□ -0.32
SMAD3-204ENST00000540846 WDR27A2RRH5 827 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 E5RJQ4 531 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 C2CD2LO14523 706 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 BEST1O76090 585 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 URODP06132 367 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 TCF4P15884 667 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 DNAJB2P25686 324 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 PSMA2P25787 234 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 ECHS1P30084 290 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 PTPN7P35236 360 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 PTGIRP43119 386 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 SMAD3P84022 425 aaKnown RBP13.07□□□□□ -0.32
SMAD3-204ENST00000540846 TSPY1Q01534 308 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 ROR1Q01973 937 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 UBE3AQ05086 875 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 GPR17Q13304 367 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 KLF1Q13351 362 aaPredicted RBP13.07□□□□□ -0.32
SMAD3-204ENST00000540846 SLC39A12Q504Y0 691 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 CLEC20AQ6ZU45 233 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 SND1Q7KZF4 910 aaKnown RBP eCLIP13.07□□□□□ -0.32
SMAD3-204ENST00000540846 JAMLQ86YT9 394 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 TTC9BQ8N6N2 239 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 ANKRD52Q8NB46 1076 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 ZMIZ2Q8NF64 920 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 SLC35F5Q8WV83 523 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 IFT81Q8WYA0 676 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 SLCO2A1Q92959 643 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 MAGOHBQ96A72 148 aaKnown RBP13.07□□□□□ -0.32
SMAD3-204ENST00000540846 HERPUD2Q9BSE4 406 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 C11orf84Q9BUA3 381 aaPredicted RBP13.07□□□□□ -0.32
SMAD3-204ENST00000540846 CRISPLD1Q9H336 500 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 ACBD3Q9H3P7 528 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 CSNK1G1Q9HCP0 422 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 CYLDQ9NQC7 956 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 FNIP2Q9P278 1114 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 RASAL2Q9UJF2 1139 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 HPCAL4Q9UM19 191 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 CDY1Q9Y6F8 540 aa13.07□□□□□ -0.32
SMAD3-204ENST00000540846 ZNF638Q14966 1978 aaKnown RBP13.07□□□□□ -0.32
SMAD3-204ENST00000540846 REV3LO60673 3130 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 MTMR11A4FU01 709 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 EPOPA6NHQ4 379 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 H3BNC9 293 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 LRCH4O75427 683 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 KRT1P04264 644 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 RALAP11233 206 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 ADORA2BP29275 332 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 COILP38432 576 aaPredicted RBP13.06□□□□□ -0.32
SMAD3-204ENST00000540846 SSR1P43307 286 aaKnown RBP13.06□□□□□ -0.32
SMAD3-204ENST00000540846 RPL34P49207 117 aaKnown RBP13.06□□□□□ -0.32
SMAD3-204ENST00000540846 BCAT1P54687 386 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 SNX16P57768 344 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 COPS2P61201 443 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 SLC25A11Q02978 314 aaKnown RBP13.06□□□□□ -0.32
SMAD3-204ENST00000540846 PDE4CQ08493 712 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 BST2Q10589 180 aaKnown RBP13.06□□□□□ -0.32
SMAD3-204ENST00000540846 ACAP1Q15027 740 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 TRADDQ15628 312 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 MAPRE1Q15691 268 aaKnown RBP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms