RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 COG5Q9UP83 839 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 SLC27A5Q9Y2P5 690 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 COL4A3Q01955 1670 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 SIGLEC16A6NMB1 481 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 YJEFN3A6XGL0 299 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 E7ENQ6 273 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 DPYSL4O14531 572 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 SART1O43290 800 aaKnown RBP11.08□□□□□ -0.64
VPS33A-204ENST00000540669 ATMINO43313 823 aaPredicted RBP11.08□□□□□ -0.64
VPS33A-204ENST00000540669 TBX10O75333 385 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 MOSPD3O75425 235 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 DAB1O75553 588 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 ZBED1O96006 694 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 ABL1P00519 1130 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 CCDC175P0C221 793 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 CSH1P0DML2 217 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 CSH2P0DML3 217 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 KLRC2P26717 231 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 GTF2F1P35269 517 aaKnown RBP eCLIP11.08□□□□□ -0.64
VPS33A-204ENST00000540669 LTBRP36941 435 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 GRIK1P39086 918 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 MAGEA1P43355 309 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 CDR1P51861 262 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 SLC8A3P57103 927 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 MRPS5P82675 430 aaKnown RBP11.08□□□□□ -0.64
VPS33A-204ENST00000540669 TWF1Q12792 350 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 ADAM15Q13444 863 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 MTMR3Q13615 1198 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 SPA17Q15506 151 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 CCDC85BQ15834 202 aaPredicted RBP11.08□□□□□ -0.64
VPS33A-204ENST00000540669 MGAT5BQ3V5L5 792 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 CYP4A22Q5TCH4 519 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 LIN9Q5TKA1 542 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 SDHAF4Q5VUM1 108 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 ELMSAN1Q6PJG2 1045 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 NIPA2Q8N8Q9 360 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 MSANTD4Q8NCY6 345 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 STKLD1Q8NE28 680 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 ZNF653Q96CK0 615 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 MSLNLQ96KJ4 702 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.08□□□□□ -0.64
VPS33A-204ENST00000540669 TLE6Q9H808 572 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 NMUR1Q9HB89 426 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 OSER1Q9NX31 292 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 CLIC5Q9NZA1 410 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 CLEC1BQ9P126 229 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 UVRAGQ9P2Y5 699 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 TFR2Q9UP52 801 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 FAM50BQ9Y247 325 aa11.08□□□□□ -0.64
VPS33A-204ENST00000540669 TMEM191CA6NGB0 347 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 C2CD4BA6NLJ0 364 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 USP27XA6NNY8 438 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 TMCO5BA8MYB1 307 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 PER2O15055 1255 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 NRDCO43847 1150 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 HSF2BPO75031 334 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 RFPL2O75678 378 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 F11P03951 625 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 FLT3P36888 993 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 TUBP50607 506 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 GPC5P78333 572 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 SLC6A3Q01959 620 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 OGDHQ02218 1023 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 TAF5Q15542 800 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 PRSS36Q5K4E3 855 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 SYCE2Q6PIF2 218 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 EP400NLQ6ZTU2 488 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 HFE2Q6ZVN8 426 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 SLFN11Q7Z7L1 901 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 SCN4BQ8IWT1 228 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 RHOT2Q8IXI1 618 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 CCAR2Q8N163 923 aaKnown RBP11.07□□□□□ -0.64
VPS33A-204ENST00000540669 LRRC57Q8N9N7 239 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 JOSD2Q8TAC2 188 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 CTNNBL1Q8WYA6 563 aaPredicted RBP11.07□□□□□ -0.64
VPS33A-204ENST00000540669 CENPIQ92674 756 aaPredicted RBP11.07□□□□□ -0.64
VPS33A-204ENST00000540669 CASP10Q92851 521 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 PGAP3Q96FM1 320 aaPredicted RBP11.07□□□□□ -0.64
VPS33A-204ENST00000540669 PRKD2Q9BZL6 878 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 TRIM7Q9C029 511 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 PDCL3Q9H2J4 239 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 FBXO44Q9H4M3 255 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 SFXN1Q9H9B4 322 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 LRRC4Q9HBW1 653 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 LUC7LQ9NQ29 371 aaKnown RBP11.07□□□□□ -0.64
VPS33A-204ENST00000540669 SEPT11Q9NVA2 429 aaKnown RBP11.07□□□□□ -0.64
VPS33A-204ENST00000540669 CNOT8Q9UFF9 292 aaKnown RBP11.07□□□□□ -0.64
VPS33A-204ENST00000540669 DPP7Q9UHL4 492 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 SCINQ9Y6U3 715 aa11.07□□□□□ -0.64
VPS33A-204ENST00000540669 UNC80Q8N2C7 3258 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 PRRG1O14668 218 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 LINC01565O15544 149 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 GALR2O43603 387 aaPredicted RBP11.06□□□□□ -0.64
VPS33A-204ENST00000540669 ENDOD1O94919 500 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 CSPG5O95196 566 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 IPO7O95373 1038 aaKnown RBP11.06□□□□□ -0.64
VPS33A-204ENST00000540669 OAS1P00973 400 aaKnown RBP11.06□□□□□ -0.64
VPS33A-204ENST00000540669 LTFP02788 710 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 SPATA31D3P0C874 917 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 ABCB4P21439 1286 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms