RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447	CCT8	P50990	548 aa		9.03	□□□□□ -0.96
YBX3-208	ENST00000540447	PKNOX1	P55347	436 aa		9.03	□□□□□ -0.96
YBX3-208	ENST00000540447	GRM1	Q13255	1194 aa		9.03	□□□□□ -0.96
YBX3-208	ENST00000540447	TSN	Q15631	228 aa	Known RBP	9.03	□□□□□ -0.96
YBX3-208	ENST00000540447	AGK	Q53H12	422 aa		9.03	□□□□□ -0.96
YBX3-208	ENST00000540447	TRIM72	Q6ZMU5	477 aa		9.03	□□□□□ -0.96
YBX3-208	ENST00000540447	RBM17	Q96I25	401 aa	Known RBP	9.03	□□□□□ -0.96
YBX3-208	ENST00000540447	PHF12	Q96QT6	1004 aa		9.03	□□□□□ -0.96
YBX3-208	ENST00000540447	ERGIC2	Q96RQ1	377 aa		9.03	□□□□□ -0.96
YBX3-208	ENST00000540447	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	9.03	□□□□□ -0.96
YBX3-208	ENST00000540447	NUDT5	Q9UKK9	219 aa		9.03	□□□□□ -0.96
YBX3-208	ENST00000540447	AGAP1	Q9UPQ3	857 aa		9.03	□□□□□ -0.96
YBX3-208	ENST00000540447	YEATS2	Q9ULM3	1422 aa		9.02	□□□□□ -0.96
YBX3-208	ENST00000540447	ACE	P12821	1306 aa		9.02	□□□□□ -0.96
YBX3-208	ENST00000540447	C5orf58	C9J3I9	102 aa		9.02	□□□□□ -0.96
YBX3-208	ENST00000540447	BOLA2-SMG1P6	H3BVE0	249 aa		9.02	□□□□□ -0.96
YBX3-208	ENST00000540447	RARA	P10276	462 aa		9.02	□□□□□ -0.96
YBX3-208	ENST00000540447	CYP51A1	Q16850	503 aa		9.02	□□□□□ -0.96
YBX3-208	ENST00000540447	WDR45B	Q5MNZ6	344 aa		9.02	□□□□□ -0.96
YBX3-208	ENST00000540447	ANO7	Q6IWH7	933 aa		9.02	□□□□□ -0.96
YBX3-208	ENST00000540447	TXNDC11	Q6PKC3	985 aa		9.02	□□□□□ -0.96
YBX3-208	ENST00000540447	ELMO2	Q96JJ3	720 aa		9.02	□□□□□ -0.96
YBX3-208	ENST00000540447	EGFL8	Q99944	293 aa		9.02	□□□□□ -0.96
YBX3-208	ENST00000540447	RIC8B	Q9NVN3	520 aa		9.02	□□□□□ -0.96
YBX3-208	ENST00000540447	CHORDC1	Q9UHD1	332 aa	Predicted RBP	9.02	□□□□□ -0.96
YBX3-208	ENST00000540447	GTF3C4	Q9UKN8	822 aa		9.02	□□□□□ -0.96
YBX3-208	ENST00000540447	GINS2	Q9Y248	185 aa		9.02	□□□□□ -0.96
YBX3-208	ENST00000540447	AGRP	O00253	132 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	CDK17	Q00537	523 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	UGP2	Q16851	508 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	CRTC3	Q6UUV7	619 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	ZNF570	Q96NI8	536 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	S100A14	Q9HCY8	104 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	MROH7-TTC4	A0A0A0MT08	1334 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	SNAP23	O00161	211 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	CSPG5	O95196	566 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	ALAD	P13716	330 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	SLC1A6	P48664	564 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	CDH6	P55285	790 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	PTEN	P60484	403 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	TAP1	Q03518	808 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	ARSH	Q5FYA8	562 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	DDI2	Q5TDH0	399 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	MZT2A	Q6P582	158 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	KLHDC10	Q6PID8	442 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	SCARA5	Q6ZMJ2	495 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	SEPT12	Q8IYM1	358 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	TMEM117	Q9H0C3	514 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	RIBC2	Q9H4K1	309 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	STARD7	Q9NQZ5	370 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	DUSP12	Q9UNI6	340 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	SORCS3	Q9UPU3	1222 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	FDFT1	P37268	417 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	PARP10	Q53GL7	1025 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	SPDYA	Q5MJ70	313 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	CREG2	Q8IUH2	290 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	ZDHHC13	Q8IUH4	622 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	FBXO36	Q8NEA4	188 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	NSMCE2	Q96MF7	247 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	HEXIM2	Q96MH2	286 aa	Known RBP	9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	ZFYVE28	Q9HCC9	887 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	THAP1	Q9NVV9	213 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	COMMD9	Q9P000	198 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	TBC1D14	Q9P2M4	693 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	GIT1	Q9Y2X7	761 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	CDK13	Q14004	1512 aa	Known RBP	9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	ILVBL	A1L0T0	632 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	NEURL1B	A8MQ27	555 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	ZBTB5	O15062	677 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	POR	P16435	677 aa	Predicted RBP	9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	MSH3	P20585	1137 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	HIBADH	P31937	336 aa	Known RBP	9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	DEFA5	Q01523	94 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	SWI5	Q1ZZU3	235 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	ARL13B	Q3SXY8	428 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	TTC23	Q5W5X9	447 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	TMEM270	Q6UE05	265 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	ANKRD23	Q86SG2	305 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	MAPKAPK5	Q8IW41	473 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	SAMD3	Q8N6K7	520 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	TSPAN17	Q96FV3	270 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	RNF145	Q96MT1	663 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	CCDC115	Q96NT0	180 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	ZSWIM1	Q9BR11	485 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	HGH1	Q9BTY7	390 aa		9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	GPBP1L1	Q9HC44	474 aa	Predicted RBP	9.02	□□□□□ -0.97
YBX3-208	ENST00000540447	TEX14	Q8IWB6	1497 aa		9.01	□□□□□ -0.97
YBX3-208	ENST00000540447	UBA6	A0AVT1	1052 aa	Predicted RBP	9.01	□□□□□ -0.97
YBX3-208	ENST00000540447	UBE2QL1	A1L167	161 aa		9.01	□□□□□ -0.97
YBX3-208	ENST00000540447	CAPN8	A6NHC0	703 aa		9.01	□□□□□ -0.97
YBX3-208	ENST00000540447	FBP2	O00757	339 aa		9.01	□□□□□ -0.97
YBX3-208	ENST00000540447	PSAP	P07602	524 aa		9.01	□□□□□ -0.97
YBX3-208	ENST00000540447	YES1	P07947	543 aa		9.01	□□□□□ -0.97
YBX3-208	ENST00000540447	CPA3	P15088	417 aa		9.01	□□□□□ -0.97
YBX3-208	ENST00000540447	AP1S2	P56377	157 aa		9.01	□□□□□ -0.97
YBX3-208	ENST00000540447	ARHGEF6	Q15052	776 aa		9.01	□□□□□ -0.97
YBX3-208	ENST00000540447	CA9	Q16790	459 aa		9.01	□□□□□ -0.97
YBX3-208	ENST00000540447	ALF	Q53S48	1182 aa		9.01	□□□□□ -0.97
YBX3-208	ENST00000540447	TNFAIP8L3	Q5GJ75	292 aa		9.01	□□□□□ -0.97
YBX3-208	ENST00000540447	FAM47B	Q8NA70	645 aa		9.01	□□□□□ -0.97

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