RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 RDM1Q8NG50 284 aa21.12■□□□□ 0.97
TMEM260-203ENST00000539559 UPF1Q92900 1129 aaKnown RBP eCLIP21.12■□□□□ 0.97
TMEM260-203ENST00000539559 GPRASP2Q96D09 838 aa21.12■□□□□ 0.97
TMEM260-203ENST00000539559 RILPQ96NA2 401 aa21.12■□□□□ 0.97
TMEM260-203ENST00000539559 NIF3L1Q9GZT8 377 aa21.12■□□□□ 0.97
TMEM260-203ENST00000539559 PCMTD2Q9NV79 361 aa21.12■□□□□ 0.97
TMEM260-203ENST00000539559 SLC7A8Q9UHI5 535 aa21.12■□□□□ 0.97
TMEM260-203ENST00000539559 H7C0C1 242 aa21.11■□□□□ 0.97
TMEM260-203ENST00000539559 VWA5AO00534 786 aa21.11■□□□□ 0.97
TMEM260-203ENST00000539559 SORBS2O94875 1100 aaKnown RBP21.11■□□□□ 0.97
TMEM260-203ENST00000539559 KRT7P08729 469 aa21.11■□□□□ 0.97
TMEM260-203ENST00000539559 ANPEPP15144 967 aa21.11■□□□□ 0.97
TMEM260-203ENST00000539559 ATP5OP48047 213 aa21.11■□□□□ 0.97
TMEM260-203ENST00000539559 ENPEPQ07075 957 aa21.11■□□□□ 0.97
TMEM260-203ENST00000539559 RBBP5Q15291 538 aaKnown RBP21.11■□□□□ 0.97
TMEM260-203ENST00000539559 HADHQ16836 314 aaKnown RBP21.11■□□□□ 0.97
TMEM260-203ENST00000539559 XKR3Q5GH77 459 aa21.11■□□□□ 0.97
TMEM260-203ENST00000539559 SLFN12LQ6IEE8 588 aa21.11■□□□□ 0.97
TMEM260-203ENST00000539559 SNRNP48Q6IEG0 339 aaKnown RBP21.11■□□□□ 0.97
TMEM260-203ENST00000539559 POLNQ7Z5Q5 900 aa21.11■□□□□ 0.97
TMEM260-203ENST00000539559 ULK2Q8IYT8 1036 aa21.11■□□□□ 0.97
TMEM260-203ENST00000539559 GALNT15Q8N3T1 639 aa21.11■□□□□ 0.97
TMEM260-203ENST00000539559 ZNF280CQ8ND82 737 aa21.11■□□□□ 0.97
TMEM260-203ENST00000539559 FGD4Q96M96 766 aa21.11■□□□□ 0.97
TMEM260-203ENST00000539559 MMP19Q99542 508 aa21.11■□□□□ 0.97
TMEM260-203ENST00000539559 ASCC2Q9H1I8 757 aaPredicted RBP21.11■□□□□ 0.97
TMEM260-203ENST00000539559 TTLL3Q9Y4R7 772 aa21.11■□□□□ 0.97
TMEM260-203ENST00000539559 I3L4J1 428 aa21.11■□□□□ 0.97
TMEM260-203ENST00000539559 CDO1Q16878 200 aa21.11■□□□□ 0.97
TMEM260-203ENST00000539559 TTC13Q8NBP0 860 aa21.11■□□□□ 0.97
TMEM260-203ENST00000539559 E2F7Q96AV8 911 aa21.11■□□□□ 0.97
TMEM260-203ENST00000539559 TUBGCP5Q96RT8 1024 aa21.11■□□□□ 0.97
TMEM260-203ENST00000539559 SHCBP1LQ9BZQ2 653 aa21.11■□□□□ 0.97
TMEM260-203ENST00000539559 GGA3Q9NZ52 723 aa21.11■□□□□ 0.97
TMEM260-203ENST00000539559 ZNF212Q9UDV6 495 aa21.11■□□□□ 0.97
TMEM260-203ENST00000539559 FZD1Q9UP38 647 aa21.11■□□□□ 0.97
TMEM260-203ENST00000539559 GRAP2O75791 330 aa21.1■□□□□ 0.97
TMEM260-203ENST00000539559 PTPRAP18433 802 aa21.1■□□□□ 0.97
TMEM260-203ENST00000539559 YWHAZP63104 245 aaKnown RBP21.1■□□□□ 0.97
TMEM260-203ENST00000539559 ROR1Q01973 937 aa21.1■□□□□ 0.97
TMEM260-203ENST00000539559 ROR2Q01974 943 aaKnown RBP21.1■□□□□ 0.97
TMEM260-203ENST00000539559 TRPC3Q13507 836 aa21.1■□□□□ 0.97
TMEM260-203ENST00000539559 CAPSQ13938 189 aa21.1■□□□□ 0.97
TMEM260-203ENST00000539559 PLAC1Q9HBJ0 212 aa21.1■□□□□ 0.97
TMEM260-203ENST00000539559 MAGEA13PA6NCF6 341 aa21.1■□□□□ 0.97
TMEM260-203ENST00000539559 H0YCG3 227 aa21.1■□□□□ 0.97
TMEM260-203ENST00000539559 APOC4-APOC2K7ER74 178 aa21.1■□□□□ 0.97
TMEM260-203ENST00000539559 LDHAP00338 332 aaKnown RBP21.1■□□□□ 0.97
TMEM260-203ENST00000539559 APOC2P02655 101 aa21.1■□□□□ 0.97
TMEM260-203ENST00000539559 EIF4BP23588 611 aaKnown RBP21.1■□□□□ 0.97
TMEM260-203ENST00000539559 MROH9Q5TGP6 573 aa21.1■□□□□ 0.97
TMEM260-203ENST00000539559 C1orf146Q5VVC0 180 aa21.1■□□□□ 0.97
TMEM260-203ENST00000539559 SLC26A11Q86WA9 606 aa21.1■□□□□ 0.97
TMEM260-203ENST00000539559 TMPRSS6Q8IU80 811 aa21.1■□□□□ 0.97
TMEM260-203ENST00000539559 POU5F2Q8N7G0 328 aa21.1■□□□□ 0.97
TMEM260-203ENST00000539559 USP6NLQ92738 828 aa21.1■□□□□ 0.97
TMEM260-203ENST00000539559 TRIM4Q9C037 500 aa21.1■□□□□ 0.97
TMEM260-203ENST00000539559 MMADHCQ9H3L0 296 aaPredicted RBP21.1■□□□□ 0.97
TMEM260-203ENST00000539559 STAU2Q9NUL3 570 aaKnown RBP eCLIP21.1■□□□□ 0.97
TMEM260-203ENST00000539559 GPATCH2LQ9NWQ4 482 aa21.1■□□□□ 0.97
TMEM260-203ENST00000539559 MAP3K20Q9NYL2 800 aaKnown RBP21.1■□□□□ 0.97
TMEM260-203ENST00000539559 HMGXB4Q9UGU5 601 aa21.1■□□□□ 0.97
TMEM260-203ENST00000539559 PLA2G4CQ9UP65 541 aa21.1■□□□□ 0.97
TMEM260-203ENST00000539559 PLLPQ9Y342 182 aa21.1■□□□□ 0.97
TMEM260-203ENST00000539559 F5H423 210 aaPredicted RBP21.09■□□□□ 0.97
TMEM260-203ENST00000539559 C1QAP02745 245 aa21.09■□□□□ 0.97
TMEM260-203ENST00000539559 KRT19P08727 400 aa21.09■□□□□ 0.97
TMEM260-203ENST00000539559 SUPT20HL2P0C7V6 817 aa21.09■□□□□ 0.97
TMEM260-203ENST00000539559 NAMPTP43490 491 aa21.09■□□□□ 0.97
TMEM260-203ENST00000539559 CDH6P55285 790 aa21.09■□□□□ 0.97
TMEM260-203ENST00000539559 KCNJ11Q14654 390 aa21.09■□□□□ 0.97
TMEM260-203ENST00000539559 ZNF699Q32M78 642 aa21.09■□□□□ 0.97
TMEM260-203ENST00000539559 SUPT20HL1Q3ZLR7 823 aa21.09■□□□□ 0.97
TMEM260-203ENST00000539559 TRMT10BQ6PF06 316 aaKnown RBP21.09■□□□□ 0.97
TMEM260-203ENST00000539559 CEP120Q8N960 986 aa21.09■□□□□ 0.97
TMEM260-203ENST00000539559 GSTCDQ8NEC7 633 aa21.09■□□□□ 0.97
TMEM260-203ENST00000539559 SMYD3Q9H7B4 428 aa21.09■□□□□ 0.97
TMEM260-203ENST00000539559 USP18Q9UMW8 372 aa21.09■□□□□ 0.97
TMEM260-203ENST00000539559 HEY1Q9Y5J3 304 aa21.09■□□□□ 0.97
TMEM260-203ENST00000539559 PPP2R3BQ9Y5P8 575 aa21.09■□□□□ 0.97
TMEM260-203ENST00000539559 CSH1P0DML2 217 aa21.09■□□□□ 0.97
TMEM260-203ENST00000539559 CSH2P0DML3 217 aa21.09■□□□□ 0.97
TMEM260-203ENST00000539559 ASPAP45381 313 aa21.09■□□□□ 0.97
TMEM260-203ENST00000539559 RAP1GDS1P52306 607 aa21.09■□□□□ 0.97
TMEM260-203ENST00000539559 TAP1Q03518 808 aa21.09■□□□□ 0.97
TMEM260-203ENST00000539559 C15orf59Q2T9L4 293 aaPredicted RBP21.09■□□□□ 0.97
TMEM260-203ENST00000539559 TTC39BQ5VTQ0 682 aaPredicted RBP21.09■□□□□ 0.97
TMEM260-203ENST00000539559 NUDCD3Q8IVD9 361 aa21.09■□□□□ 0.97
TMEM260-203ENST00000539559 BRSK2Q8IWQ3 736 aa21.09■□□□□ 0.97
TMEM260-203ENST00000539559 THNSL1Q8IYQ7 743 aa21.09■□□□□ 0.97
TMEM260-203ENST00000539559 ZC3H7BQ9UGR2 993 aaKnown RBP21.09■□□□□ 0.97
TMEM260-203ENST00000539559 NDC80O14777 642 aa21.08■□□□□ 0.97
TMEM260-203ENST00000539559 KCNN4O15554 427 aa21.08■□□□□ 0.97
TMEM260-203ENST00000539559 LYPLA1O75608 230 aaPredicted RBP21.08■□□□□ 0.97
TMEM260-203ENST00000539559 RFPL1O75677 317 aa21.08■□□□□ 0.97
TMEM260-203ENST00000539559 ATG7O95352 703 aa21.08■□□□□ 0.97
TMEM260-203ENST00000539559 LYNP07948 512 aa21.08■□□□□ 0.97
TMEM260-203ENST00000539559 SRGAP2CP0DJJ0 459 aa21.08■□□□□ 0.97
TMEM260-203ENST00000539559 SLC25A3Q00325 362 aa21.08■□□□□ 0.97
TMEM260-203ENST00000539559 PPP1R2P3Q6NXS1 205 aa21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms