RNA–Protein interactions for RNA: ENST00000539204.5

YBX3-207, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 649 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-207ENST00000539204 TDRD10Q5VZ19 366 aaKnown RBP12.84□□□□□ -0.35
YBX3-207ENST00000539204 GRAMD4Q6IC98 578 aa12.84□□□□□ -0.35
YBX3-207ENST00000539204 KCTD17Q8N5Z5 321 aa12.84□□□□□ -0.35
YBX3-207ENST00000539204 NSUN7Q8NE18 718 aaKnown RBP12.84□□□□□ -0.35
YBX3-207ENST00000539204 SCFD1Q8WVM8 642 aa12.84□□□□□ -0.35
YBX3-207ENST00000539204 FGF11Q92914 225 aa12.84□□□□□ -0.35
YBX3-207ENST00000539204 ARID3AQ99856 593 aa12.84□□□□□ -0.35
YBX3-207ENST00000539204 TTLL2Q9BWV7 592 aa12.84□□□□□ -0.35
YBX3-207ENST00000539204 EIF2B4Q9UI10 523 aaKnown RBP12.84□□□□□ -0.35
YBX3-207ENST00000539204 SH3BP1Q9Y3L3 701 aa12.84□□□□□ -0.35
YBX3-207ENST00000539204 RAD54BQ9Y620 910 aa12.84□□□□□ -0.35
YBX3-207ENST00000539204 MGAQ8IWI9 3026 aa12.83□□□□□ -0.35
YBX3-207ENST00000539204 A0A1B0GVT2 93 aa12.83□□□□□ -0.36
YBX3-207ENST00000539204 B8ZZF3 427 aa12.83□□□□□ -0.36
YBX3-207ENST00000539204 GFRA2O00451 464 aa12.83□□□□□ -0.36
YBX3-207ENST00000539204 GABRDO14764 452 aa12.83□□□□□ -0.36
YBX3-207ENST00000539204 OAS1P00973 400 aaKnown RBP12.83□□□□□ -0.36
YBX3-207ENST00000539204 CDK4P11802 303 aa12.83□□□□□ -0.36
YBX3-207ENST00000539204 POLR2BP30876 1174 aaKnown RBP12.83□□□□□ -0.36
YBX3-207ENST00000539204 TRAPPC10P48553 1259 aa12.83□□□□□ -0.36
YBX3-207ENST00000539204 CXADRP78310 365 aa12.83□□□□□ -0.36
YBX3-207ENST00000539204 TAF10Q12962 218 aa12.83□□□□□ -0.36
YBX3-207ENST00000539204 MAPRE1Q15691 268 aaKnown RBP12.83□□□□□ -0.36
YBX3-207ENST00000539204 CCDC142Q17RM4 750 aa12.83□□□□□ -0.36
YBX3-207ENST00000539204 SLFN12LQ6IEE8 588 aa12.83□□□□□ -0.36
YBX3-207ENST00000539204 SLC39A4Q6P5W5 647 aa12.83□□□□□ -0.36
YBX3-207ENST00000539204 OSTM1Q86WC4 334 aa12.83□□□□□ -0.36
YBX3-207ENST00000539204 TMEM25Q86YD3 366 aa12.83□□□□□ -0.36
YBX3-207ENST00000539204 MYCT1Q8N699 235 aa12.83□□□□□ -0.36
YBX3-207ENST00000539204 FAM181AQ8N9Y4 354 aa12.83□□□□□ -0.36
YBX3-207ENST00000539204 CACTINQ8WUQ7 758 aaKnown RBP12.83□□□□□ -0.36
YBX3-207ENST00000539204 WBP1Q96G27 269 aa12.83□□□□□ -0.36
YBX3-207ENST00000539204 SLITRK1Q96PX8 696 aa12.83□□□□□ -0.36
YBX3-207ENST00000539204 HNRNPABQ99729 332 aaKnown RBP12.83□□□□□ -0.36
YBX3-207ENST00000539204 FOXP1Q9H334 677 aaPredicted RBP12.83□□□□□ -0.36
YBX3-207ENST00000539204 PPP4R2Q9NY27 417 aa12.83□□□□□ -0.36
YBX3-207ENST00000539204 GMIPQ9P107 970 aa12.83□□□□□ -0.36
YBX3-207ENST00000539204 AGO2Q9UKV8 859 aaKnown RBP12.83□□□□□ -0.36
YBX3-207ENST00000539204 SNX9Q9Y5X1 595 aa12.83□□□□□ -0.36
YBX3-207ENST00000539204 TCHHQ07283 1943 aa12.83□□□□□ -0.36
YBX3-207ENST00000539204 ATMQ13315 3056 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 WASH3PC4AMC7 463 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 ANKRD63C9JTQ0 380 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 K7ENM7 598 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 TRIM66O15016 1216 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 HCRTO43612 131 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 JAK2O60674 1132 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 ATP2C2O75185 946 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 IL18RAPO95256 599 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 WISP1O95388 367 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 ITGB3P05106 788 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 PLA2G4BP0C869 781 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 ABCD1P33897 745 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 AFF3P51826 1226 aaKnown RBP12.82□□□□□ -0.36
YBX3-207ENST00000539204 SLC12A3P55017 1021 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 NOP14P78316 857 aaKnown RBP12.82□□□□□ -0.36
YBX3-207ENST00000539204 TFAMQ00059 246 aaKnown RBP12.82□□□□□ -0.36
YBX3-207ENST00000539204 GNL2Q13823 731 aaKnown RBP12.82□□□□□ -0.36
YBX3-207ENST00000539204 ME3Q16798 604 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 KIF19Q2TAC6 998 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 DTHD1Q6ZMT9 781 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 ADGRF2Q8IZF7 708 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 CSGALNACT2Q8N6G5 542 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 TOP6BLQ8N6T0 577 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 SNIP1Q8TAD8 396 aaKnown RBP12.82□□□□□ -0.36
YBX3-207ENST00000539204 GTF3C6Q969F1 213 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 XPO6Q96QU8 1125 aaKnown RBP12.82□□□□□ -0.36
YBX3-207ENST00000539204 MMTAG2Q9BU76 263 aaKnown RBP12.82□□□□□ -0.36
YBX3-207ENST00000539204 NUP58Q9BVL2 599 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 NRSN2Q9GZP1 204 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 DNAJC17Q9NVM6 304 aaKnown RBP12.82□□□□□ -0.36
YBX3-207ENST00000539204 GDAP2Q9NXN4 497 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 FTSJ1Q9UET6 329 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 DNMT3LQ9UJW3 386 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 ODF2LQ9ULJ1 636 aa12.82□□□□□ -0.36
YBX3-207ENST00000539204 NOL7Q9UMY1 257 aaKnown RBP12.82□□□□□ -0.36
YBX3-207ENST00000539204 COL6A6A6NMZ7 2263 aa12.81□□□□□ -0.36
YBX3-207ENST00000539204 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.81□□□□□ -0.36
YBX3-207ENST00000539204 PRRT4C9JH25 899 aa12.81□□□□□ -0.36
YBX3-207ENST00000539204 TRAK2O60296 914 aa12.81□□□□□ -0.36
YBX3-207ENST00000539204 PCDHGA12O60330 932 aa12.81□□□□□ -0.36
YBX3-207ENST00000539204 C1SP09871 688 aa12.81□□□□□ -0.36
YBX3-207ENST00000539204 PLCG1P19174 1290 aa12.81□□□□□ -0.36
YBX3-207ENST00000539204 TPMTP51580 245 aa12.81□□□□□ -0.36
YBX3-207ENST00000539204 RHDQ02161 417 aa12.81□□□□□ -0.36
YBX3-207ENST00000539204 CYP27A1Q02318 531 aa12.81□□□□□ -0.36
YBX3-207ENST00000539204 TLE3Q04726 772 aa12.81□□□□□ -0.36
YBX3-207ENST00000539204 TARDBPQ13148 414 aaKnown RBP eCLIP12.81□□□□□ -0.36
YBX3-207ENST00000539204 STARD3Q14849 445 aa12.81□□□□□ -0.36
YBX3-207ENST00000539204 RTP5Q14D33 572 aa12.81□□□□□ -0.36
YBX3-207ENST00000539204 TEAD4Q15561 434 aa12.81□□□□□ -0.36
YBX3-207ENST00000539204 ARSHQ5FYA8 562 aa12.81□□□□□ -0.36
YBX3-207ENST00000539204 DPH6Q7L8W6 267 aa12.81□□□□□ -0.36
YBX3-207ENST00000539204 BBS7Q8IWZ6 715 aa12.81□□□□□ -0.36
YBX3-207ENST00000539204 LRRC52Q8N7C0 313 aa12.81□□□□□ -0.36
YBX3-207ENST00000539204 KRI1Q8N9T8 703 aaKnown RBP12.81□□□□□ -0.36
YBX3-207ENST00000539204 C1orf216Q8TAB5 229 aa12.81□□□□□ -0.36
YBX3-207ENST00000539204 MYLPFQ96A32 169 aa12.81□□□□□ -0.36
YBX3-207ENST00000539204 TMEM176AQ96HP8 235 aa12.81□□□□□ -0.36
YBX3-207ENST00000539204 PLIN2Q99541 437 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms