RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 CLDN3O15551 220 aa12.88□□□□□ -0.35
USP3-203ENST00000538686 SCO2O43819 266 aa12.88□□□□□ -0.35
USP3-203ENST00000538686 CALUO43852 315 aaPredicted RBP12.88□□□□□ -0.35
USP3-203ENST00000538686 CCNT1O60563 726 aaKnown RBP12.88□□□□□ -0.35
USP3-203ENST00000538686 ALX3O95076 343 aa12.88□□□□□ -0.35
USP3-203ENST00000538686 IL6STP40189 918 aaPredicted RBP12.88□□□□□ -0.35
USP3-203ENST00000538686 IST1P53990 364 aa12.88□□□□□ -0.35
USP3-203ENST00000538686 ALDH18A1P54886 795 aaKnown RBP12.88□□□□□ -0.35
USP3-203ENST00000538686 GNG2P59768 71 aa12.88□□□□□ -0.35
USP3-203ENST00000538686 ABCB5Q2M3G0 1257 aa12.88□□□□□ -0.35
USP3-203ENST00000538686 KRT79Q5XKE5 535 aa12.88□□□□□ -0.35
USP3-203ENST00000538686 ANKRD26P1Q6NSI1 321 aa12.88□□□□□ -0.35
USP3-203ENST00000538686 TUBA3EQ6PEY2 450 aa12.88□□□□□ -0.35
USP3-203ENST00000538686 XKR5Q6UX68 686 aa12.88□□□□□ -0.35
USP3-203ENST00000538686 SLC51BQ86UW2 128 aa12.88□□□□□ -0.35
USP3-203ENST00000538686 SLC15A4Q8N697 577 aa12.88□□□□□ -0.35
USP3-203ENST00000538686 MIGA1Q8NAN2 632 aa12.88□□□□□ -0.35
USP3-203ENST00000538686 EXD1Q8NHP7 514 aa12.88□□□□□ -0.35
USP3-203ENST00000538686 RASGRP4Q8TDF6 673 aa12.88□□□□□ -0.35
USP3-203ENST00000538686 CCDC124Q96CT7 223 aaKnown RBP12.88□□□□□ -0.35
USP3-203ENST00000538686 FAR2Q96K12 515 aa12.88□□□□□ -0.35
USP3-203ENST00000538686 RMDN3Q96TC7 470 aa12.88□□□□□ -0.35
USP3-203ENST00000538686 DHRS4Q9BTZ2 278 aa12.88□□□□□ -0.35
USP3-203ENST00000538686 RNF38Q9H0F5 515 aa12.88□□□□□ -0.35
USP3-203ENST00000538686 KANSL2Q9H9L4 492 aa12.88□□□□□ -0.35
USP3-203ENST00000538686 CNTN3Q9P232 1028 aa12.88□□□□□ -0.35
USP3-203ENST00000538686 SLC17A7Q9P2U7 560 aa12.88□□□□□ -0.35
USP3-203ENST00000538686 SUCOQ9UBS9 1254 aaKnown RBP12.88□□□□□ -0.35
USP3-203ENST00000538686 PRPF19Q9UMS4 504 aaKnown RBP12.88□□□□□ -0.35
USP3-203ENST00000538686 SDR42E2A6NKP2 422 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 MEI4A8MW99 385 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 TSPAN1O60635 241 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 ATE1O95260 518 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 CASP5P51878 434 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 IFITM2Q01629 132 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 SELENBP1Q13228 472 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 PDK1Q15118 436 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 SHROOM1Q2M3G4 852 aaPredicted RBP12.87□□□□□ -0.35
USP3-203ENST00000538686 METTL24Q5JXM2 366 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 LYSMD3Q7Z3D4 306 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 NEK8Q86SG6 692 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 SEPT12Q8IYM1 358 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 KIAA2013Q8IYS2 634 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 CAPSLQ8WWF8 208 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 DPF3Q92784 378 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 ATP2A3Q93084 1043 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 WRNIP1Q96S55 665 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 ZNF347Q96SE7 839 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 C17orf80Q9BSJ5 609 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 WDR12Q9GZL7 423 aaKnown RBP12.87□□□□□ -0.35
USP3-203ENST00000538686 SMARCAD1Q9H4L7 1026 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 CHST7Q9NS84 486 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 SEPT11Q9NVA2 429 aaKnown RBP12.87□□□□□ -0.35
USP3-203ENST00000538686 MKS1Q9NXB0 559 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.87□□□□□ -0.35
USP3-203ENST00000538686 STK39Q9UEW8 545 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 LRP5O75197 1615 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 MYH14Q7Z406 1995 aaKnown RBP12.87□□□□□ -0.35
USP3-203ENST00000538686 ADAMTSL3P82987 1691 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 RIC1Q4ADV7 1423 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 PSME4Q14997 1843 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 IQANK1A0A1B0GTG1 560 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 ADAMTS3O15072 1205 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 NUAK1O60285 661 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 ICMTO60725 284 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 GCATO75600 419 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 MT-ND3P03897 115 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 SLC16A2P36021 539 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 AQP5P55064 265 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 STX1BP61266 288 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 CDKL1Q00532 357 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 DRAP1Q14919 205 aaPredicted RBP12.87□□□□□ -0.35
USP3-203ENST00000538686 MORF4L2Q15014 288 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 C6orf10Q5SRN2 563 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 ZNF618Q5T7W0 954 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 ISLR2Q6UXK2 745 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 SLC30A10Q6XR72 485 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 PRR23CQ6ZRP0 262 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 LINC00299Q6ZSB3 139 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 IGFN1Q86VF2 1251 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 ARID3BQ8IVW6 561 aaPredicted RBP12.87□□□□□ -0.35
USP3-203ENST00000538686 MZB1Q8WU39 189 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 TTC17Q96AE7 1141 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 ZNF597Q96LX8 424 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 PWWP2AQ96N64 755 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 AGPAT1Q99943 283 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 HOXD1Q9GZZ0 328 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 CXorf21Q9HAI6 301 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 SACM1LQ9NTJ5 587 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 TBC1D14Q9P2M4 693 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 AJAP1Q9UKB5 411 aaPredicted RBP12.87□□□□□ -0.35
USP3-203ENST00000538686 RNF11Q9Y3C5 154 aa12.87□□□□□ -0.35
USP3-203ENST00000538686 DNALI1O14645 258 aaPredicted RBP12.86□□□□□ -0.35
USP3-203ENST00000538686 SLC26A4O43511 780 aa12.86□□□□□ -0.35
USP3-203ENST00000538686 KLHL41O60662 606 aa12.86□□□□□ -0.35
USP3-203ENST00000538686 SPAG6O75602 509 aa12.86□□□□□ -0.35
USP3-203ENST00000538686 PROCP04070 461 aa12.86□□□□□ -0.35
USP3-203ENST00000538686 FGRP09769 529 aa12.86□□□□□ -0.35
USP3-203ENST00000538686 TSHRP16473 764 aa12.86□□□□□ -0.35
USP3-203ENST00000538686 FOXD4Q12950 439 aaPredicted RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms