RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 PNPLA4P41247 253 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 SARSP49591 514 aaKnown RBP10.26□□□□□ -0.77
COL4A6-208ENST00000538570 EIF2B5Q13144 721 aaKnown RBP10.26□□□□□ -0.77
COL4A6-208ENST00000538570 SCARF1Q14162 830 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 C19orf18Q8NEA5 215 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 CAPN10Q9HC96 672 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 CYP39A1Q9NYL5 469 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 RPS6KL1Q9Y6S9 549 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 FLT1P17948 1338 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 ATP4AP20648 1035 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 EPHB2P29323 1055 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 CNGA2Q16280 664 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 GALNT6Q8NCL4 622 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 WDCPQ9H6R7 721 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 WHRNQ9P202 907 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 SPACA6W5XKT8 324 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 C1orf232A0A0U1RR37 186 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 DYNC1LI2O43237 492 aaPredicted RBP10.26□□□□□ -0.77
COL4A6-208ENST00000538570 NDUFB10O96000 172 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 DARSP14868 501 aaKnown RBP10.26□□□□□ -0.77
COL4A6-208ENST00000538570 ALDH1A3P47895 512 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 FXR2P51116 673 aaKnown RBP eCLIP10.26□□□□□ -0.77
COL4A6-208ENST00000538570 TMEM62Q0P6H9 643 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 TDRD10Q5VZ19 366 aaKnown RBP10.26□□□□□ -0.77
COL4A6-208ENST00000538570 SEL1L3Q68CR1 1132 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 EFCAB12Q6NXP0 572 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 LRRC6Q86X45 466 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 ELOA2Q8IYF1 753 aaPredicted RBP10.26□□□□□ -0.77
COL4A6-208ENST00000538570 FBXO36Q8NEA4 188 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 RAET1EQ8TD07 263 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 ACSF2Q96CM8 615 aaPredicted RBP10.26□□□□□ -0.77
COL4A6-208ENST00000538570 ERGIC2Q96RQ1 377 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 MXRA8Q9BRK3 442 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 THAP2Q9H0W7 228 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 CHMP1AQ9HD42 196 aaPredicted RBP10.26□□□□□ -0.77
COL4A6-208ENST00000538570 TAGLN3Q9UI15 199 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 C2CD2Q9Y426 696 aa10.26□□□□□ -0.77
COL4A6-208ENST00000538570 C19orf81C9J6K1 198 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 O00370 1275 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 CNOT3O75175 753 aaKnown RBP10.25□□□□□ -0.77
COL4A6-208ENST00000538570 MUTP22033 750 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 CCNCP24863 283 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 RALGDSQ12967 914 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 BFSP2Q13515 415 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 PGS1Q32NB8 556 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 GJB7Q6PEY0 223 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 GLB1LQ6UWU2 654 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 LRRC49Q8IUZ0 686 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 C1orf131Q8NDD1 294 aaKnown RBP10.25□□□□□ -0.77
COL4A6-208ENST00000538570 BLOC1S5Q8TDH9 187 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 SLITRK1Q96PX8 696 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 TSEN34Q9BSV6 310 aaKnown RBP10.25□□□□□ -0.77
COL4A6-208ENST00000538570 CNPY3Q9BT09 278 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 FAM192AQ9GZU8 254 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 CLEC4MQ9H2X3 399 aaPredicted RBP10.25□□□□□ -0.77
COL4A6-208ENST00000538570 GTF3C4Q9UKN8 822 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 VPS26AO75436 327 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 SLC2A3P11169 496 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 ATP6V1B2P21281 511 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 CBX3Q13185 183 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 EPC2Q52LR7 807 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 TRIM48Q8IWZ4 208 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 ELP3Q9H9T3 547 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 CYLDQ9NQC7 956 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 NYAP2Q9P242 653 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 HPS5Q9UPZ3 1129 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 SH3GLB1Q9Y371 365 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 KBTBD13C9JR72 458 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 SNPHO15079 494 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 CDC40O60508 579 aaKnown RBP eCLIP10.25□□□□□ -0.77
COL4A6-208ENST00000538570 IFNA14P01570 189 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 NR3C2P08235 984 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 FCGR1AP12314 374 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 GPC1P35052 558 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 CUL2Q13617 745 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 ALFQ53S48 1182 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 FAXCQ5TGI0 409 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 MIER2Q8N344 545 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 NARS2Q96I59 477 aaKnown RBP10.25□□□□□ -0.77
COL4A6-208ENST00000538570 RIT2Q99578 217 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 PRRG3Q9BZD7 231 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 RERGLQ9H628 205 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 NMRK2Q9NPI5 230 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 ARHGEF3Q9NR81 526 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 GTF2A1LQ9UNN4 478 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 SDR42E2A6NKP2 422 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 E9PBE3 544 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 SLCO1B7G3V0H7 640 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 TRIM13O60858 407 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 FYNP06241 537 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 GHRP10912 638 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 CNTFP26441 200 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 RPA1P27694 616 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 OR1G1P47890 313 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 PHKG1Q16816 387 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 CROCCP3Q8IVE0 287 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 BHMTQ93088 406 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 CAMKK2Q96RR4 588 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 TMBIM4Q9HC24 238 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 VTA1Q9NP79 307 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms