RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 FGF3P11487 239 aaPredicted RBP3.02□□□□□ -1.93
SKA3-207ENST00000536239 CNGA1P29973 690 aa3.02□□□□□ -1.93
SKA3-207ENST00000536239 DGKEP52429 567 aa3.02□□□□□ -1.93
SKA3-207ENST00000536239 PGGT1BP53609 377 aa3.02□□□□□ -1.93
SKA3-207ENST00000536239 YPEL5P62699 121 aa3.02□□□□□ -1.93
SKA3-207ENST00000536239 PRTGQ2VWP7 1150 aa3.02□□□□□ -1.93
SKA3-207ENST00000536239 ZIK1Q3SY52 487 aaPredicted RBP3.02□□□□□ -1.93
SKA3-207ENST00000536239 CC2D1BQ5T0F9 858 aaKnown RBP3.02□□□□□ -1.93
SKA3-207ENST00000536239 PDXDC1Q6P996 788 aa3.02□□□□□ -1.93
SKA3-207ENST00000536239 VSTM1Q6UX27 236 aa3.02□□□□□ -1.93
SKA3-207ENST00000536239 KRT26Q7Z3Y9 468 aa3.02□□□□□ -1.93
SKA3-207ENST00000536239 NR2C2APQ86WQ0 139 aa3.02□□□□□ -1.93
SKA3-207ENST00000536239 C16orf71Q8IYS4 520 aaPredicted RBP3.02□□□□□ -1.93
SKA3-207ENST00000536239 MAFAQ8NHW3 353 aaPredicted RBP3.02□□□□□ -1.93
SKA3-207ENST00000536239 FAM167AQ96KS9 214 aa3.02□□□□□ -1.93
SKA3-207ENST00000536239 C17orf80Q9BSJ5 609 aa3.02□□□□□ -1.93
SKA3-207ENST00000536239 ARHGAP39Q9C0H5 1083 aa3.02□□□□□ -1.93
SKA3-207ENST00000536239 LMBRD1Q9NUN5 540 aa3.02□□□□□ -1.93
SKA3-207ENST00000536239 PNPOQ9NVS9 261 aa3.02□□□□□ -1.93
SKA3-207ENST00000536239 GEMIN8Q9NWZ8 242 aaKnown RBP3.02□□□□□ -1.93
SKA3-207ENST00000536239 SLC5A4Q9NY91 659 aa3.02□□□□□ -1.93
SKA3-207ENST00000536239 MRFAP1Q9Y605 127 aa3.02□□□□□ -1.93
SKA3-207ENST00000536239 SYF2O95926 243 aaKnown RBP3.01□□□□□ -1.93
SKA3-207ENST00000536239 CYP2C9P11712 490 aa3.01□□□□□ -1.93
SKA3-207ENST00000536239 KCNA3P22001 575 aa3.01□□□□□ -1.93
SKA3-207ENST00000536239 IL6STP40189 918 aaPredicted RBP3.01□□□□□ -1.93
SKA3-207ENST00000536239 DIO1P49895 249 aa3.01□□□□□ -1.93
SKA3-207ENST00000536239 SOX8P57073 446 aa3.01□□□□□ -1.93
SKA3-207ENST00000536239 KRT85P78386 507 aa3.01□□□□□ -1.93
SKA3-207ENST00000536239 KCNB1Q14721 858 aa3.01□□□□□ -1.93
SKA3-207ENST00000536239 NFATC4Q14934 902 aa3.01□□□□□ -1.93
SKA3-207ENST00000536239 MLC1Q15049 377 aa3.01□□□□□ -1.93
SKA3-207ENST00000536239 RALBP1Q15311 655 aa3.01□□□□□ -1.93
SKA3-207ENST00000536239 DENND2CQ68D51 928 aa3.01□□□□□ -1.93
SKA3-207ENST00000536239 ZNF329Q86UD4 541 aa3.01□□□□□ -1.93
SKA3-207ENST00000536239 RAB11FIP4Q86YS3 637 aa3.01□□□□□ -1.93
SKA3-207ENST00000536239 NUDCD2Q8WVJ2 157 aa3.01□□□□□ -1.93
SKA3-207ENST00000536239 SLITRK1Q96PX8 696 aa3.01□□□□□ -1.93
SKA3-207ENST00000536239 MESP1Q9BRJ9 268 aa3.01□□□□□ -1.93
SKA3-207ENST00000536239 NTPCRQ9BSD7 190 aaKnown RBP3.01□□□□□ -1.93
SKA3-207ENST00000536239 TSPYL1Q9H0U9 437 aa3.01□□□□□ -1.93
SKA3-207ENST00000536239 ZHX1Q9UKY1 873 aaPredicted RBP3.01□□□□□ -1.93
SKA3-207ENST00000536239 WRNQ14191 1432 aaPredicted RBP eCLIP3.01□□□□□ -1.93
SKA3-207ENST00000536239 CFAP65Q6ZU64 1925 aaKnown RBP3□□□□□ -1.93
SKA3-207ENST00000536239 A0A087WYN8 130 aa3□□□□□ -1.93
SKA3-207ENST00000536239 VGLL3A8MV65 326 aa3□□□□□ -1.93
SKA3-207ENST00000536239 M0R3H8 397 aa3□□□□□ -1.93
SKA3-207ENST00000536239 CTIFO43310 598 aaKnown RBP3□□□□□ -1.93
SKA3-207ENST00000536239 GRID2O43424 1007 aa3□□□□□ -1.93
SKA3-207ENST00000536239 FTLP02792 175 aaPredicted RBP3□□□□□ -1.93
SKA3-207ENST00000536239 VIL1P09327 827 aaKnown RBP3□□□□□ -1.93
SKA3-207ENST00000536239 MYBL2P10244 700 aa3□□□□□ -1.93
SKA3-207ENST00000536239 ARRB2P32121 409 aa3□□□□□ -1.93
SKA3-207ENST00000536239 KRT17Q04695 432 aa3□□□□□ -1.93
SKA3-207ENST00000536239 PCBP2Q15366 365 aaKnown RBP eCLIP3□□□□□ -1.93
SKA3-207ENST00000536239 MGAT5BQ3V5L5 792 aa3□□□□□ -1.93
SKA3-207ENST00000536239 HSP90AB3PQ58FF7 597 aa3□□□□□ -1.93
SKA3-207ENST00000536239 EARS2Q5JPH6 523 aaKnown RBP3□□□□□ -1.93
SKA3-207ENST00000536239 EFCAB2Q5VUJ9 269 aa3□□□□□ -1.93
SKA3-207ENST00000536239 ZNF793Q6ZN11 406 aa3□□□□□ -1.93
SKA3-207ENST00000536239 FAM43BQ6ZT52 329 aaPredicted RBP3□□□□□ -1.93
SKA3-207ENST00000536239 B4GALNT4Q76KP1 1039 aa3□□□□□ -1.93
SKA3-207ENST00000536239 FBXL14Q8N1E6 418 aa3□□□□□ -1.93
SKA3-207ENST00000536239 IQCF1Q8N6M8 205 aa3□□□□□ -1.93
SKA3-207ENST00000536239 BRIX1Q8TDN6 353 aaKnown RBP3□□□□□ -1.93
SKA3-207ENST00000536239 TMEM171Q8WVE6 324 aa3□□□□□ -1.93
SKA3-207ENST00000536239 CTHRC1Q96CG8 243 aa3□□□□□ -1.93
SKA3-207ENST00000536239 HS6ST2Q96MM7 605 aa3□□□□□ -1.93
SKA3-207ENST00000536239 CCDC94Q9BW85 323 aaPredicted RBP3□□□□□ -1.93
SKA3-207ENST00000536239 FAM126AQ9BYI3 521 aaPredicted RBP3□□□□□ -1.93
SKA3-207ENST00000536239 MYLK2Q9H1R3 596 aa3□□□□□ -1.93
SKA3-207ENST00000536239 SNX15Q9NRS6 342 aa3□□□□□ -1.93
SKA3-207ENST00000536239 ISY1Q9ULR0 285 aaKnown RBP3□□□□□ -1.93
SKA3-207ENST00000536239 TMX2Q9Y320 296 aa3□□□□□ -1.93
SKA3-207ENST00000536239 TBX22Q9Y458 520 aa3□□□□□ -1.93
SKA3-207ENST00000536239 NCAPD3P42695 1498 aa3□□□□□ -1.93
SKA3-207ENST00000536239 TTC36A6NLP5 189 aa2.99□□□□□ -1.93
SKA3-207ENST00000536239 ZNF814B7Z6K7 855 aa2.99□□□□□ -1.93
SKA3-207ENST00000536239 DYNC1I1O14576 645 aa2.99□□□□□ -1.93
SKA3-207ENST00000536239 TNFRSF13BO14836 293 aaPredicted RBP2.99□□□□□ -1.93
SKA3-207ENST00000536239 NDUFB8O95169 186 aa2.99□□□□□ -1.93
SKA3-207ENST00000536239 EPN2O95208 641 aa2.99□□□□□ -1.93
SKA3-207ENST00000536239 XRCC6P12956 609 aaKnown RBP eCLIP2.99□□□□□ -1.93
SKA3-207ENST00000536239 TACR3P29371 465 aa2.99□□□□□ -1.93
SKA3-207ENST00000536239 ALDH7A1P49419 539 aaKnown RBP2.99□□□□□ -1.93
SKA3-207ENST00000536239 MAP2K6P52564 334 aa2.99□□□□□ -1.93
SKA3-207ENST00000536239 UCP3P55916 312 aa2.99□□□□□ -1.93
SKA3-207ENST00000536239 WNT3P56703 355 aa2.99□□□□□ -1.93
SKA3-207ENST00000536239 SLC14A1Q13336 389 aa2.99□□□□□ -1.93
SKA3-207ENST00000536239 PLS1Q14651 629 aa2.99□□□□□ -1.93
SKA3-207ENST00000536239 RFX8Q6ZV50 586 aa2.99□□□□□ -1.93
SKA3-207ENST00000536239 SPATA2LQ8IUW3 424 aaPredicted RBP2.99□□□□□ -1.93
SKA3-207ENST00000536239 EGFL6Q8IUX8 553 aa2.99□□□□□ -1.93
SKA3-207ENST00000536239 GPATCH11Q8N954 259 aa2.99□□□□□ -1.93
SKA3-207ENST00000536239 NEUROG1Q92886 237 aa2.99□□□□□ -1.93
SKA3-207ENST00000536239 ATP2A3Q93084 1043 aa2.99□□□□□ -1.93
SKA3-207ENST00000536239 MED30Q96HR3 178 aa2.99□□□□□ -1.93
SKA3-207ENST00000536239 DECR2Q9NUI1 292 aa2.99□□□□□ -1.93
SKA3-207ENST00000536239 SLC52A1Q9NWF4 448 aa2.99□□□□□ -1.93
SKA3-207ENST00000536239 MGAT4CQ9UBM8 478 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms