RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 PIAS3Q9Y6X2 628 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 PATJQ8NI35 1801 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 KIF26AQ9ULI4 1882 aaPredicted RBP13.66□□□□□ -0.22
VPS28-216ENST00000533806 F5P12259 2224 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 A0A1W2PQH9 124 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 TLR5O60602 858 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 TBX18O95935 607 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 ZBED1O96006 694 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 ABL1P00519 1130 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 ATP1A3P13637 1013 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 KRT5P13647 590 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 CD72P21854 359 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 CLCN1P35523 988 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 TKTL1P51854 596 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 NUBP1P53384 320 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 COPB1P53618 953 aaKnown RBP13.66□□□□□ -0.22
VPS28-216ENST00000533806 SLC8A3P57103 927 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 IQCB1Q15051 598 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 PDGFRLQ15198 375 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 ARHGAP44Q17R89 818 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 TRIM68Q6AZZ1 485 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 ZNF852Q6ZMS4 543 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 AOPEPQ8N6M6 819 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 OSCP1Q8WVF1 389 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 ZNF606Q8WXB4 792 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 CLDN23Q96B33 292 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 NELL2Q99435 816 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 FOXQ1Q9C009 403 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 NAT10Q9H0A0 1025 aaKnown RBP13.66□□□□□ -0.22
VPS28-216ENST00000533806 KCNH6Q9H252 994 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 LINC00597Q9H2U6 94 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 C8orf33Q9H7E9 229 aaPredicted RBP13.66□□□□□ -0.22
VPS28-216ENST00000533806 LTB4R2Q9NPC1 389 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 RAPGEFL1Q9UHV5 662 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 SIK3Q9Y2K2 1263 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 SIT1Q9Y3P8 196 aa13.66□□□□□ -0.22
VPS28-216ENST00000533806 ZNF638Q14966 1978 aaKnown RBP13.65□□□□□ -0.22
VPS28-216ENST00000533806 SYCE3A1L190 88 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 LGALS16A8MUM7 142 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 MAN2B1O00754 1011 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 RARGP13631 454 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 ARSAP15289 507 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 UCHL3P15374 230 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 PSEN1P49768 467 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 ZNF165P49910 485 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 RUNX3Q13761 415 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 EML3Q32P44 896 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 ITPRIPL2Q3MIP1 535 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 TXNDC11Q6PKC3 985 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 RALGPS2Q86X27 583 aaPredicted RBP13.65□□□□□ -0.22
VPS28-216ENST00000533806 CCDC105Q8IYK2 499 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 ADGRG2Q8IZP9 1017 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 WDTC1Q8N5D0 677 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 STK32AQ8WU08 396 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 SECISBP2LQ93073 1101 aaKnown RBP13.65□□□□□ -0.22
VPS28-216ENST00000533806 WBP2Q969T9 261 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 MSANTD3Q96H12 275 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 HSFY1Q96LI6 401 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 KLF16Q9BXK1 252 aaPredicted RBP13.65□□□□□ -0.22
VPS28-216ENST00000533806 ULBP1Q9BZM6 244 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 GANQ9H2C0 597 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 EBF3Q9H4W6 596 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 SMPD4Q9NXE4 827 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 CYTH4Q9UIA0 394 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 FHOD1Q9Y613 1164 aa13.65□□□□□ -0.22
VPS28-216ENST00000533806 E2F8A0AVK6 867 aa13.64□□□□□ -0.23
VPS28-216ENST00000533806 FAM170BA6NMN3 283 aa13.64□□□□□ -0.23
VPS28-216ENST00000533806 SPECC1L-ADORA2AF8WAN1 911 aa13.64□□□□□ -0.23
VPS28-216ENST00000533806 M0QYV0 167 aa13.64□□□□□ -0.23
VPS28-216ENST00000533806 EPHB6O15197 1021 aa13.64□□□□□ -0.23
VPS28-216ENST00000533806 PNMA6AP0CW24 399 aaPredicted RBP13.64□□□□□ -0.23
VPS28-216ENST00000533806 MBL2P11226 248 aaPredicted RBP13.64□□□□□ -0.23
VPS28-216ENST00000533806 RFX1P22670 979 aa13.64□□□□□ -0.23
VPS28-216ENST00000533806 TARSP26639 723 aaKnown RBP13.64□□□□□ -0.23
VPS28-216ENST00000533806 CTHP32929 405 aa13.64□□□□□ -0.23
VPS28-216ENST00000533806 ATP5C1P36542 298 aaKnown RBP13.64□□□□□ -0.23
VPS28-216ENST00000533806 SOX9P48436 509 aa13.64□□□□□ -0.23
VPS28-216ENST00000533806 KLK7P49862 253 aa13.64□□□□□ -0.23
VPS28-216ENST00000533806 DRAP1Q14919 205 aaPredicted RBP13.64□□□□□ -0.23
VPS28-216ENST00000533806 SKOR2Q2VWA4 1001 aaPredicted RBP13.64□□□□□ -0.23
VPS28-216ENST00000533806 DENND1BQ6P3S1 775 aa13.64□□□□□ -0.23
VPS28-216ENST00000533806 DDX42Q86XP3 938 aaKnown RBP eCLIP13.64□□□□□ -0.23
VPS28-216ENST00000533806 CSGALNACT1Q8TDX6 532 aa13.64□□□□□ -0.23
VPS28-216ENST00000533806 NDRG1Q92597 394 aaKnown RBP13.64□□□□□ -0.23
VPS28-216ENST00000533806 ERGIC2Q96RQ1 377 aa13.64□□□□□ -0.23
VPS28-216ENST00000533806 SLC4A5Q9BY07 1137 aa13.64□□□□□ -0.23
VPS28-216ENST00000533806 STK33Q9BYT3 514 aa13.64□□□□□ -0.23
VPS28-216ENST00000533806 CNGB3Q9NQW8 809 aa13.64□□□□□ -0.23
VPS28-216ENST00000533806 DUS2Q9NX74 493 aaKnown RBP13.64□□□□□ -0.23
VPS28-216ENST00000533806 CFAP97Q9P2B7 532 aa13.64□□□□□ -0.23
VPS28-216ENST00000533806 NAGPAQ9UK23 515 aa13.64□□□□□ -0.23
VPS28-216ENST00000533806 WNT6Q9Y6F9 365 aa13.64□□□□□ -0.23
VPS28-216ENST00000533806 CACNA1HO95180 2353 aa13.63□□□□□ -0.23
VPS28-216ENST00000533806 YJEFN3A6XGL0 299 aa13.63□□□□□ -0.23
VPS28-216ENST00000533806 E7ENQ6 273 aa13.63□□□□□ -0.23
VPS28-216ENST00000533806 MED7O43513 233 aa13.63□□□□□ -0.23
VPS28-216ENST00000533806 DCNP07585 359 aaKnown RBP13.63□□□□□ -0.23
VPS28-216ENST00000533806 GNA15P30679 374 aa13.63□□□□□ -0.23
VPS28-216ENST00000533806 RPS9P46781 194 aaKnown RBP13.63□□□□□ -0.23
VPS28-216ENST00000533806 DAOAP59103 153 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms