RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 SIX2Q9NPC8 291 aa8.74□□□□□ -1.01
NEDD8-207ENST00000533242 RXFP3Q9NSD7 469 aa8.74□□□□□ -1.01
NEDD8-207ENST00000533242 THG1LQ9NWX6 298 aaKnown RBP8.74□□□□□ -1.01
NEDD8-207ENST00000533242 TUBGCP4Q9UGJ1 667 aa8.74□□□□□ -1.01
NEDD8-207ENST00000533242 DNAH14Q0VDD8 3507 aa8.73□□□□□ -1.01
NEDD8-207ENST00000533242 ZSCAN5CA6NGD5 496 aaPredicted RBP8.73□□□□□ -1.01
NEDD8-207ENST00000533242 CETN3O15182 167 aa8.73□□□□□ -1.01
NEDD8-207ENST00000533242 PALMO75781 387 aa8.73□□□□□ -1.01
NEDD8-207ENST00000533242 SERPING1P05155 500 aa8.73□□□□□ -1.01
NEDD8-207ENST00000533242 OR4Q2P0C623 313 aa8.73□□□□□ -1.01
NEDD8-207ENST00000533242 TYMPP19971 482 aa8.73□□□□□ -1.01
NEDD8-207ENST00000533242 PON1P27169 355 aa8.73□□□□□ -1.01
NEDD8-207ENST00000533242 HOXC13P31276 330 aa8.73□□□□□ -1.01
NEDD8-207ENST00000533242 MPLP40238 635 aa8.73□□□□□ -1.01
NEDD8-207ENST00000533242 DCAF17Q5H9S7 520 aaPredicted RBP8.73□□□□□ -1.01
NEDD8-207ENST00000533242 RNF43Q68DV7 783 aa8.73□□□□□ -1.01
NEDD8-207ENST00000533242 FSTL4Q6MZW2 842 aa8.73□□□□□ -1.01
NEDD8-207ENST00000533242 CCNI2Q6ZMN8 369 aaPredicted RBP8.73□□□□□ -1.01
NEDD8-207ENST00000533242 GAREM2Q75VX8 874 aa8.73□□□□□ -1.01
NEDD8-207ENST00000533242 ZNF571Q7Z3V5 609 aaPredicted RBP8.73□□□□□ -1.01
NEDD8-207ENST00000533242 USP37Q86T82 979 aa8.73□□□□□ -1.01
NEDD8-207ENST00000533242 DAW1Q8N136 415 aa8.73□□□□□ -1.01
NEDD8-207ENST00000533242 CAMKK1Q8N5S9 505 aa8.73□□□□□ -1.01
NEDD8-207ENST00000533242 OLIG1Q8TAK6 271 aa8.73□□□□□ -1.01
NEDD8-207ENST00000533242 SLC35C1Q96A29 364 aa8.73□□□□□ -1.01
NEDD8-207ENST00000533242 TMEM209Q96SK2 561 aa8.73□□□□□ -1.01
NEDD8-207ENST00000533242 EDEM3Q9BZQ6 932 aa8.73□□□□□ -1.01
NEDD8-207ENST00000533242 C17orf75Q9HAS0 396 aa8.73□□□□□ -1.01
NEDD8-207ENST00000533242 HPCAL4Q9UM19 191 aa8.73□□□□□ -1.01
NEDD8-207ENST00000533242 FRYLO94915 3013 aa8.73□□□□□ -1.01
NEDD8-207ENST00000533242 NUP205Q92621 2012 aa8.73□□□□□ -1.01
NEDD8-207ENST00000533242 MTMR11A4FU01 709 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 AGPSO00116 658 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 HIP1RO75146 1068 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 GCNT3O95395 438 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 NR3C1P04150 777 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 HARSP12081 509 aaKnown RBP8.72□□□□□ -1.01
NEDD8-207ENST00000533242 UCHL3P15374 230 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 CYP3A5P20815 502 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 GABRR2P28476 465 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 HNRNPH2P55795 449 aaKnown RBP8.72□□□□□ -1.01
NEDD8-207ENST00000533242 TUBB4BP68371 445 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 CKAP4Q07065 602 aaKnown RBP8.72□□□□□ -1.01
NEDD8-207ENST00000533242 GRSF1Q12849 480 aaKnown RBP eCLIP8.72□□□□□ -1.01
NEDD8-207ENST00000533242 SLC18A3Q16572 532 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 TMEM196Q5HYL7 178 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 PKN3Q6P5Z2 889 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 DSTYKQ6XUX3 929 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 ZNF572Q7Z3I7 529 aaPredicted RBP8.72□□□□□ -1.01
NEDD8-207ENST00000533242 KDF1Q8NAX2 398 aaPredicted RBP8.72□□□□□ -1.01
NEDD8-207ENST00000533242 ZBTB45Q96K62 511 aaPredicted RBP8.72□□□□□ -1.01
NEDD8-207ENST00000533242 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.72□□□□□ -1.01
NEDD8-207ENST00000533242 SELENOOQ9BVL4 669 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 AIPL1Q9NZN9 384 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 ARMCX3Q9UH62 379 aaPredicted RBP8.72□□□□□ -1.01
NEDD8-207ENST00000533242 ZMYM5Q9UJ78 669 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 RALYQ9UKM9 306 aaKnown RBP8.72□□□□□ -1.01
NEDD8-207ENST00000533242 TARSL2A2RTX5 802 aaKnown RBP8.72□□□□□ -1.01
NEDD8-207ENST00000533242 GRID2IPA4D2P6 1211 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 TMEM8BA6NDV4 472 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 TRDMT1O14717 391 aaKnown RBP8.72□□□□□ -1.01
NEDD8-207ENST00000533242 TOM1L1O75674 476 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 RHOBTB1O94844 696 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 PRAMEF12O95522 483 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 GNA14O95837 355 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 PAX3P23760 479 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 CDC25CP30307 473 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 TNNT3P45378 269 aaPredicted RBP8.72□□□□□ -1.01
NEDD8-207ENST00000533242 TNK2Q07912 1038 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 KLHL30Q0D2K2 578 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 STRN3Q13033 797 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 MAPK7Q13164 816 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 ZBTB6Q15916 424 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 PLK5Q496M5 336 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 OVOS1Q6IE37 1185 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 PSAPL1Q6NUJ1 521 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 UNQ6494/PRO21346Q6UXR6 183 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 C1orf186Q6ZWK4 172 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 MMGT1Q8N4V1 131 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 SYN2Q92777 582 aaPredicted RBP8.72□□□□□ -1.01
NEDD8-207ENST00000533242 GCNAQ96QF7 691 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 TSPAN18Q96SJ8 248 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 TIPINQ9BVW5 301 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 KCNG1Q9UIX4 513 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 UBQLN1Q9UMX0 589 aaKnown RBP8.72□□□□□ -1.01
NEDD8-207ENST00000533242 SLC27A5Q9Y2P5 690 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 HYOU1Q9Y4L1 999 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 PCDHB13Q9Y5F0 798 aa8.72□□□□□ -1.01
NEDD8-207ENST00000533242 TIMM13Q9Y5L4 95 aaPredicted RBP8.72□□□□□ -1.01
NEDD8-207ENST00000533242 PDXKO00764 312 aa8.71□□□□□ -1.01
NEDD8-207ENST00000533242 SLC16A4O15374 487 aa8.71□□□□□ -1.01
NEDD8-207ENST00000533242 XPOTO43592 962 aaKnown RBP8.71□□□□□ -1.01
NEDD8-207ENST00000533242 CLTAP09496 248 aa8.71□□□□□ -1.01
NEDD8-207ENST00000533242 PRLRP16471 622 aa8.71□□□□□ -1.01
NEDD8-207ENST00000533242 PXNP49023 591 aaPredicted RBP8.71□□□□□ -1.01
NEDD8-207ENST00000533242 LMAN1P49257 510 aa8.71□□□□□ -1.01
NEDD8-207ENST00000533242 NOVA1P51513 510 aaKnown RBP8.71□□□□□ -1.01
NEDD8-207ENST00000533242 NAP1L1P55209 391 aaKnown RBP8.71□□□□□ -1.01
NEDD8-207ENST00000533242 RNASE9P60153 205 aaKnown RBP8.71□□□□□ -1.01
NEDD8-207ENST00000533242 MCL1Q07820 350 aa8.71□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms