RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 SHDQ96IW2 340 aa20.9■□□□□ 0.94
CPSF1-209ENST00000532725 ZFRQ96KR1 1074 aaKnown RBP20.9■□□□□ 0.94
CPSF1-209ENST00000532725 HSFY1Q96LI6 401 aa20.9■□□□□ 0.94
CPSF1-209ENST00000532725 ERGIC2Q96RQ1 377 aa20.9■□□□□ 0.94
CPSF1-209ENST00000532725 STK33Q9BYT3 514 aa20.9■□□□□ 0.94
CPSF1-209ENST00000532725 GANQ9H2C0 597 aa20.9■□□□□ 0.94
CPSF1-209ENST00000532725 MFSD1Q9H3U5 465 aa20.9■□□□□ 0.94
CPSF1-209ENST00000532725 LRRC4Q9HBW1 653 aa20.9■□□□□ 0.94
CPSF1-209ENST00000532725 CBX8Q9HC52 389 aa20.9■□□□□ 0.94
CPSF1-209ENST00000532725 MTPAPQ9NVV4 582 aaKnown RBP eCLIP20.9■□□□□ 0.94
CPSF1-209ENST00000532725 CPQQ9Y646 472 aa20.9■□□□□ 0.94
CPSF1-209ENST00000532725 THAP12O43422 761 aa20.89■□□□□ 0.93
CPSF1-209ENST00000532725 TLR5O60602 858 aa20.89■□□□□ 0.93
CPSF1-209ENST00000532725 CAVIN2O95810 425 aa20.89■□□□□ 0.93
CPSF1-209ENST00000532725 ZBED1O96006 694 aa20.89■□□□□ 0.93
CPSF1-209ENST00000532725 PNMA6AP0CW24 399 aaPredicted RBP20.89■□□□□ 0.93
CPSF1-209ENST00000532725 MBL2P11226 248 aaPredicted RBP20.89■□□□□ 0.93
CPSF1-209ENST00000532725 RPL34P49207 117 aaKnown RBP20.89■□□□□ 0.93
CPSF1-209ENST00000532725 PTK2Q05397 1052 aa20.89■□□□□ 0.93
CPSF1-209ENST00000532725 RAPGEF1Q13905 1077 aa20.89■□□□□ 0.93
CPSF1-209ENST00000532725 MTF1Q14872 753 aa20.89■□□□□ 0.93
CPSF1-209ENST00000532725 SYCP1Q15431 976 aa20.89■□□□□ 0.93
CPSF1-209ENST00000532725 CWF19L1Q69YN2 538 aaKnown RBP20.89■□□□□ 0.93
CPSF1-209ENST00000532725 ASTLQ6HA08 431 aaPredicted RBP20.89■□□□□ 0.93
CPSF1-209ENST00000532725 CC2D1AQ6P1N0 951 aaPredicted RBP20.89■□□□□ 0.93
CPSF1-209ENST00000532725 DENND1BQ6P3S1 775 aa20.89■□□□□ 0.93
CPSF1-209ENST00000532725 BHLHA9Q7RTU4 235 aa20.89■□□□□ 0.93
CPSF1-209ENST00000532725 SCML4Q8N228 414 aa20.89■□□□□ 0.93
CPSF1-209ENST00000532725 FLCNQ8NFG4 579 aa20.89■□□□□ 0.93
CPSF1-209ENST00000532725 NDRG1Q92597 394 aaKnown RBP20.89■□□□□ 0.93
CPSF1-209ENST00000532725 ULBP1Q9BZM6 244 aa20.89■□□□□ 0.93
CPSF1-209ENST00000532725 TBC1D17Q9HA65 648 aa20.89■□□□□ 0.93
CPSF1-209ENST00000532725 SMPD4Q9NXE4 827 aa20.89■□□□□ 0.93
CPSF1-209ENST00000532725 GTSE1Q9NYZ3 720 aa20.89■□□□□ 0.93
CPSF1-209ENST00000532725 CLIC5Q9NZA1 410 aa20.89■□□□□ 0.93
CPSF1-209ENST00000532725 EPHB6O15197 1021 aa20.88■□□□□ 0.93
CPSF1-209ENST00000532725 PI15O43692 258 aa20.88■□□□□ 0.93
CPSF1-209ENST00000532725 RARGP13631 454 aa20.88■□□□□ 0.93
CPSF1-209ENST00000532725 GLULP15104 373 aa20.88■□□□□ 0.93
CPSF1-209ENST00000532725 AVPR2P30518 371 aa20.88■□□□□ 0.93
CPSF1-209ENST00000532725 RGS7P49802 495 aa20.88■□□□□ 0.93
CPSF1-209ENST00000532725 TNK2Q07912 1038 aa20.88■□□□□ 0.93
CPSF1-209ENST00000532725 KLHDC10Q6PID8 442 aa20.88■□□□□ 0.93
CPSF1-209ENST00000532725 SLC47A2Q86VL8 602 aa20.88■□□□□ 0.93
CPSF1-209ENST00000532725 KIAA1958Q8N8K9 716 aa20.88■□□□□ 0.93
CPSF1-209ENST00000532725 CSGALNACT1Q8TDX6 532 aa20.88■□□□□ 0.93
CPSF1-209ENST00000532725 STK32AQ8WU08 396 aa20.88■□□□□ 0.93
CPSF1-209ENST00000532725 OSCP1Q8WVF1 389 aa20.88■□□□□ 0.93
CPSF1-209ENST00000532725 LINC00597Q9H2U6 94 aa20.88■□□□□ 0.93
CPSF1-209ENST00000532725 RTN4Q9NQC3 1192 aaKnown RBP20.88■□□□□ 0.93
CPSF1-209ENST00000532725 HPS4Q9NQG7 708 aa20.88■□□□□ 0.93
CPSF1-209ENST00000532725 FAM207AQ9NSI2 230 aaPredicted RBP20.88■□□□□ 0.93
CPSF1-209ENST00000532725 NAGPAQ9UK23 515 aa20.88■□□□□ 0.93
CPSF1-209ENST00000532725 KANSL1LA0AUZ9 987 aa20.87■□□□□ 0.93
CPSF1-209ENST00000532725 STK25O00506 426 aa20.87■□□□□ 0.93
CPSF1-209ENST00000532725 TEX33O43247 280 aa20.87■□□□□ 0.93
CPSF1-209ENST00000532725 CD72P21854 359 aa20.87■□□□□ 0.93
CPSF1-209ENST00000532725 ATP5C1P36542 298 aaKnown RBP20.87■□□□□ 0.93
CPSF1-209ENST00000532725 VCPP55072 806 aaKnown RBP20.87■□□□□ 0.93
CPSF1-209ENST00000532725 BPIFB4P59827 614 aa20.87■□□□□ 0.93
CPSF1-209ENST00000532725 ADIGQ0VDE8 80 aa20.87■□□□□ 0.93
CPSF1-209ENST00000532725 TRIM68Q6AZZ1 485 aa20.87■□□□□ 0.93
CPSF1-209ENST00000532725 TPRG1Q6ZUI0 275 aa20.87■□□□□ 0.93
CPSF1-209ENST00000532725 LUZP1Q86V48 1076 aa20.87■□□□□ 0.93
CPSF1-209ENST00000532725 SUGP1Q8IWZ8 645 aaKnown RBP20.87■□□□□ 0.93
CPSF1-209ENST00000532725 ARHGAP18Q8N392 663 aa20.87■□□□□ 0.93
CPSF1-209ENST00000532725 WDTC1Q8N5D0 677 aa20.87■□□□□ 0.93
CPSF1-209ENST00000532725 KLF16Q9BXK1 252 aaPredicted RBP20.87■□□□□ 0.93
CPSF1-209ENST00000532725 EBF3Q9H4W6 596 aa20.87■□□□□ 0.93
CPSF1-209ENST00000532725 CNGB3Q9NQW8 809 aa20.87■□□□□ 0.93
CPSF1-209ENST00000532725 DUS2Q9NX74 493 aaKnown RBP20.87■□□□□ 0.93
CPSF1-209ENST00000532725 CYTH4Q9UIA0 394 aa20.87■□□□□ 0.93
CPSF1-209ENST00000532725 NUDT5Q9UKK9 219 aa20.87■□□□□ 0.93
CPSF1-209ENST00000532725 PCDHGC3Q9UN70 934 aa20.87■□□□□ 0.93
CPSF1-209ENST00000532725 OTOL1A6NHN0 477 aaPredicted RBP20.86■□□□□ 0.93
CPSF1-209ENST00000532725 RALAP11233 206 aa20.86■□□□□ 0.93
CPSF1-209ENST00000532725 LCP1P13796 627 aa20.86■□□□□ 0.93
CPSF1-209ENST00000532725 AOC1P19801 751 aa20.86■□□□□ 0.93
CPSF1-209ENST00000532725 POLR2FP61218 127 aaKnown RBP20.86■□□□□ 0.93
CPSF1-209ENST00000532725 YWHAGP61981 247 aaKnown RBP eCLIP20.86■□□□□ 0.93
CPSF1-209ENST00000532725 RUNX3Q13761 415 aa20.86■□□□□ 0.93
CPSF1-209ENST00000532725 PDGFRLQ15198 375 aa20.86■□□□□ 0.93
CPSF1-209ENST00000532725 ITPRIPL2Q3MIP1 535 aa20.86■□□□□ 0.93
CPSF1-209ENST00000532725 DDX42Q86XP3 938 aaKnown RBP eCLIP20.86■□□□□ 0.93
CPSF1-209ENST00000532725 SIX6OS1Q8N1H7 587 aa20.86■□□□□ 0.93
CPSF1-209ENST00000532725 TMEM105Q8N8V8 129 aa20.86■□□□□ 0.93
CPSF1-209ENST00000532725 TTC16Q8NEE8 873 aa20.86■□□□□ 0.93
CPSF1-209ENST00000532725 TTC8Q8TAM2 541 aa20.86■□□□□ 0.93
CPSF1-209ENST00000532725 NAP1L5Q96NT1 182 aaPredicted RBP20.86■□□□□ 0.93
CPSF1-209ENST00000532725 SLC4A5Q9BY07 1137 aa20.86■□□□□ 0.93
CPSF1-209ENST00000532725 LHX5Q9H2C1 402 aa20.86■□□□□ 0.93
CPSF1-209ENST00000532725 C8orf33Q9H7E9 229 aaPredicted RBP20.86■□□□□ 0.93
CPSF1-209ENST00000532725 CFAP97Q9P2B7 532 aa20.86■□□□□ 0.93
CPSF1-209ENST00000532725 MTF2Q9Y483 593 aaPredicted RBP20.86■□□□□ 0.93
CPSF1-209ENST00000532725 DAAM1Q9Y4D1 1078 aa20.86■□□□□ 0.93
CPSF1-209ENST00000532725 PIAS3Q9Y6X2 628 aa20.86■□□□□ 0.93
CPSF1-209ENST00000532725 YJEFN3A6XGL0 299 aa20.85■□□□□ 0.93
CPSF1-209ENST00000532725 E7ENQ6 273 aa20.85■□□□□ 0.93
CPSF1-209ENST00000532725 F8VZ95 297 aa20.85■□□□□ 0.93
CPSF1-209ENST00000532725 PIK3R2O00459 728 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms