RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 DUSP15Q9H1R2 295 aaPredicted RBP15.59■□□□□ 0.09
VPS28-215ENST00000531924 MMRN2Q9H8L6 949 aa15.59■□□□□ 0.09
VPS28-215ENST00000531924 POLMQ9NP87 494 aaPredicted RBP15.59■□□□□ 0.09
VPS28-215ENST00000531924 DEC1Q9P2X7 70 aa15.59■□□□□ 0.09
VPS28-215ENST00000531924 MAPK8IP1Q9UQF2 711 aa15.59■□□□□ 0.09
VPS28-215ENST00000531924 HPSEQ9Y251 543 aa15.59■□□□□ 0.09
VPS28-215ENST00000531924 DNAH14Q0VDD8 3507 aa15.58■□□□□ 0.08
VPS28-215ENST00000531924 ZBTB24O43167 697 aaPredicted RBP15.58■□□□□ 0.08
VPS28-215ENST00000531924 MAP3K13O43283 966 aa15.58■□□□□ 0.08
VPS28-215ENST00000531924 TLR5O60602 858 aa15.58■□□□□ 0.08
VPS28-215ENST00000531924 CAVIN2O95810 425 aa15.58■□□□□ 0.08
VPS28-215ENST00000531924 PSMC2P35998 433 aaKnown RBP15.58■□□□□ 0.08
VPS28-215ENST00000531924 TNFRSF4P43489 277 aa15.58■□□□□ 0.08
VPS28-215ENST00000531924 GCLMP48507 274 aa15.58■□□□□ 0.08
VPS28-215ENST00000531924 LIMK1P53667 647 aa15.58■□□□□ 0.08
VPS28-215ENST00000531924 CRY1Q16526 586 aa15.58■□□□□ 0.08
VPS28-215ENST00000531924 HSF5Q4G112 596 aaPredicted RBP15.58■□□□□ 0.08
VPS28-215ENST00000531924 STPG1Q5TH74 334 aa15.58■□□□□ 0.08
VPS28-215ENST00000531924 SNX30Q5VWJ9 437 aa15.58■□□□□ 0.08
VPS28-215ENST00000531924 FAM186BQ8IYM0 893 aa15.58■□□□□ 0.08
VPS28-215ENST00000531924 PGBD3Q8N328 593 aa15.58■□□□□ 0.08
VPS28-215ENST00000531924 NAT16Q8N8M0 369 aa15.58■□□□□ 0.08
VPS28-215ENST00000531924 C12orf29Q8N999 325 aa15.58■□□□□ 0.08
VPS28-215ENST00000531924 SPACA7Q96KW9 195 aa15.58■□□□□ 0.08
VPS28-215ENST00000531924 CNOT6LQ96LI5 555 aaKnown RBP15.58■□□□□ 0.08
VPS28-215ENST00000531924 SMOQ99835 787 aa15.58■□□□□ 0.08
VPS28-215ENST00000531924 NT5C1AQ9BXI3 368 aa15.58■□□□□ 0.08
VPS28-215ENST00000531924 SMOC1Q9H4F8 434 aa15.58■□□□□ 0.08
VPS28-215ENST00000531924 CYP3A43Q9HB55 503 aa15.58■□□□□ 0.08
VPS28-215ENST00000531924 IL37Q9NZH6 218 aa15.58■□□□□ 0.08
VPS28-215ENST00000531924 HMGXB4Q9UGU5 601 aa15.58■□□□□ 0.08
VPS28-215ENST00000531924 LSM7Q9UK45 103 aaKnown RBP15.58■□□□□ 0.08
VPS28-215ENST00000531924 TRAF3IP3Q9Y228 551 aa15.58■□□□□ 0.08
VPS28-215ENST00000531924 MAPK13O15264 365 aa15.57■□□□□ 0.08
VPS28-215ENST00000531924 RHOBTB3O94955 611 aa15.57■□□□□ 0.08
VPS28-215ENST00000531924 ADRB1P08588 477 aa15.57■□□□□ 0.08
VPS28-215ENST00000531924 TRIM49P0CI25 452 aa15.57■□□□□ 0.08
VPS28-215ENST00000531924 TRIM49CP0CI26 452 aa15.57■□□□□ 0.08
VPS28-215ENST00000531924 CD58P19256 250 aa15.57■□□□□ 0.08
VPS28-215ENST00000531924 ASPAP45381 313 aa15.57■□□□□ 0.08
VPS28-215ENST00000531924 ADAM9Q13443 819 aa15.57■□□□□ 0.08
VPS28-215ENST00000531924 GAB4Q2WGN9 574 aa15.57■□□□□ 0.08
VPS28-215ENST00000531924 PLA2G2CQ5R387 149 aa15.57■□□□□ 0.08
VPS28-215ENST00000531924 RNF43Q68DV7 783 aa15.57■□□□□ 0.08
VPS28-215ENST00000531924 TRMT11Q7Z4G4 463 aaKnown RBP15.57■□□□□ 0.08
VPS28-215ENST00000531924 BBS7Q8IWZ6 715 aa15.57■□□□□ 0.08
VPS28-215ENST00000531924 WHAMMQ8TF30 809 aa15.57■□□□□ 0.08
VPS28-215ENST00000531924 CYFIP2Q96F07 1278 aa15.57■□□□□ 0.08
VPS28-215ENST00000531924 CSNK1G1Q9HCP0 422 aa15.57■□□□□ 0.08
VPS28-215ENST00000531924 BEST1O76090 585 aa15.56■□□□□ 0.08
VPS28-215ENST00000531924 ZDHHC11BP0C7U3 371 aa15.56■□□□□ 0.08
VPS28-215ENST00000531924 PRR29P0C7W0 189 aa15.56■□□□□ 0.08
VPS28-215ENST00000531924 ACO1P21399 889 aaKnown RBP15.56■□□□□ 0.08
VPS28-215ENST00000531924 ATP5C1P36542 298 aaKnown RBP15.56■□□□□ 0.08
VPS28-215ENST00000531924 DHPSP49366 369 aaPredicted RBP15.56■□□□□ 0.08
VPS28-215ENST00000531924 BYSLQ13895 437 aaKnown RBP15.56■□□□□ 0.08
VPS28-215ENST00000531924 KRBA2Q6ZNG9 492 aa15.56■□□□□ 0.08
VPS28-215ENST00000531924 CYP2U1Q7Z449 544 aa15.56■□□□□ 0.08
VPS28-215ENST00000531924 TADA2BQ86TJ2 420 aa15.56■□□□□ 0.08
VPS28-215ENST00000531924 RASSF3Q86WH2 238 aa15.56■□□□□ 0.08
VPS28-215ENST00000531924 C12orf40Q86WS4 652 aa15.56■□□□□ 0.08
VPS28-215ENST00000531924 GUF1Q8N442 669 aaKnown RBP15.56■□□□□ 0.08
VPS28-215ENST00000531924 IL17RCQ8NAC3 791 aa15.56■□□□□ 0.08
VPS28-215ENST00000531924 MDGA1Q8NFP4 955 aa15.56■□□□□ 0.08
VPS28-215ENST00000531924 ZFRQ96KR1 1074 aaKnown RBP15.56■□□□□ 0.08
VPS28-215ENST00000531924 CNTNAP3BQ96NU0 1288 aa15.56■□□□□ 0.08
VPS28-215ENST00000531924 HNRNPABQ99729 332 aaKnown RBP15.56■□□□□ 0.08
VPS28-215ENST00000531924 CNTNAP3Q9BZ76 1288 aa15.56■□□□□ 0.08
VPS28-215ENST00000531924 NIF3L1Q9GZT8 377 aa15.56■□□□□ 0.08
VPS28-215ENST00000531924 SPHK2Q9NRA0 654 aa15.56■□□□□ 0.08
VPS28-215ENST00000531924 ATG2BQ96BY7 2078 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 GREB1Q4ZG55 1949 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 ANAPC1Q9H1A4 1944 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 A0A1W2PQ27 194 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 A0A1W2PQ64 194 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 A0A1W2PQD8 194 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 FAM92AA1XBS5 289 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 BCLAF3A2AJT9 711 aaKnown RBP15.55■□□□□ 0.08
VPS28-215ENST00000531924 SGK1O00141 431 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 KHNYNO15037 678 aaKnown RBP15.55■□□□□ 0.08
VPS28-215ENST00000531924 HOXC11O43248 304 aaPredicted RBP15.55■□□□□ 0.08
VPS28-215ENST00000531924 STX10O60499 249 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 TULP3O75386 442 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 INCA1Q0VD86 236 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 DPYDQ12882 1025 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 NFIL3Q16649 462 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 C1orf220Q5T0J3 134 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 C10orf76Q5T2E6 689 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 EMC10Q5UCC4 262 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 TCEAL6Q6IPX3 200 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 SDE2Q6IQ49 451 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 TMEM92Q6UXU6 159 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 LPCAT2Q7L5N7 544 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 TMEM25Q86YD3 366 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 SFTPA1Q8IWL2 248 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 ZMIZ2Q8NF64 920 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 KCNV2Q8TDN2 545 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 TAS1R2Q8TE23 839 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 HMGB4Q8WW32 186 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 TCEAL3Q969E4 200 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms