RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 RPS7P62081 194 aaKnown RBP3.42□□□□□ -1.86
CD44-234ENST00000531873 CXADRP78310 365 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 CCNIQ14094 377 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 E2F2Q14209 437 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 SMAD1Q15797 465 aaKnown RBP3.42□□□□□ -1.86
CD44-234ENST00000531873 GALNTL6Q49A17 601 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 PREPLQ4J6C6 727 aaPredicted RBP3.42□□□□□ -1.86
CD44-234ENST00000531873 MAP3K21Q5TCX8 1036 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 MSANTD2Q6P1R3 559 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 MICALCLQ6ZW33 695 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 BBS12Q6ZW61 710 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 RSRC2Q7L4I2 434 aaKnown RBP3.42□□□□□ -1.86
CD44-234ENST00000531873 LIMS2Q7Z4I7 341 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 ANKS1BQ7Z6G8 1248 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 TBC1D1Q86TI0 1168 aaPredicted RBP3.42□□□□□ -1.86
CD44-234ENST00000531873 SGMS1Q86VZ5 419 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 ABRAQ8N0Z2 381 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 TMEM132CQ8N3T6 1108 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 METTL25Q8N6Q8 603 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 OR6Y1Q8NGX8 325 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 SNX19Q92543 992 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 SDCCAG3Q96C92 435 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 MCRS1Q96EZ8 462 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 MAELQ96JY0 434 aaKnown RBP3.42□□□□□ -1.86
CD44-234ENST00000531873 COG8Q96MW5 612 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 TRAPPC9Q96Q05 1148 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 HIST1H2AAQ96QV6 131 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 DCLRE1CQ96SD1 692 aaKnown RBP3.42□□□□□ -1.86
CD44-234ENST00000531873 NUDT22Q9BRQ3 303 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 SLC26A6Q9BXS9 759 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 AGXT2Q9BYV1 514 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 ZNF768Q9H5H4 540 aaKnown RBP3.42□□□□□ -1.86
CD44-234ENST00000531873 TAF1DQ9H5J8 278 aaPredicted RBP3.42□□□□□ -1.86
CD44-234ENST00000531873 ELAC1Q9H777 363 aaKnown RBP3.42□□□□□ -1.86
CD44-234ENST00000531873 SEPSECSQ9HD40 501 aaKnown RBP3.42□□□□□ -1.86
CD44-234ENST00000531873 TRPM5Q9NZQ8 1165 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 EIF2B4Q9UI10 523 aaKnown RBP3.42□□□□□ -1.86
CD44-234ENST00000531873 C19orf53Q9UNZ5 99 aaPredicted RBP3.42□□□□□ -1.86
CD44-234ENST00000531873 SORCS3Q9UPU3 1222 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 CNTN6Q9UQ52 1028 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 UTP18Q9Y5J1 556 aaKnown RBP eCLIP3.42□□□□□ -1.86
CD44-234ENST00000531873 SCINQ9Y6U3 715 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 ZNF536O15090 1300 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 XDHP47989 1333 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 KRTAP23-1A1A580 65 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 MYADML2A6NDP7 307 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 B4E171 279 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 KIF28PB7ZC32 967 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 F5H697 171 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 ZSCAN9O15535 394 aaPredicted RBP3.41□□□□□ -1.86
CD44-234ENST00000531873 SNX2O60749 519 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 ERN1O75460 977 aaKnown RBP3.41□□□□□ -1.86
CD44-234ENST00000531873 RECQL4O94761 1208 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 VNN1O95497 513 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 CER1O95813 267 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 TBX18O95935 607 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 CENPBP07199 599 aaPredicted RBP3.41□□□□□ -1.86
CD44-234ENST00000531873 PDHA1P08559 390 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 ACO1P21399 889 aaKnown RBP3.41□□□□□ -1.86
CD44-234ENST00000531873 GATA3P23771 443 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 ZFP36P26651 326 aaKnown RBP3.41□□□□□ -1.86
CD44-234ENST00000531873 MAN1A1P33908 653 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 TSPAN7P41732 249 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 ATXN1P54253 815 aaKnown RBP3.41□□□□□ -1.86
CD44-234ENST00000531873 ADAM17P78536 824 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 UBE3AQ05086 875 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 CHRNDQ07001 517 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 MTAPQ13126 283 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 TUBB3Q13509 450 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 RRP1BQ14684 758 aaKnown RBP3.41□□□□□ -1.86
CD44-234ENST00000531873 CLCA4Q14CN2 919 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 ACOX1Q15067 660 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 LY6KQ17RY6 165 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 NBPF8Q3BBV2 869 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 GPATCH4Q5T3I0 446 aaKnown RBP3.41□□□□□ -1.86
CD44-234ENST00000531873 DEPDC1Q5TB30 811 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 ATPAF1Q5TC12 328 aaPredicted RBP3.41□□□□□ -1.86
CD44-234ENST00000531873 ANKRD45Q5TZF3 282 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 ICE2Q659A1 982 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 SLC9A4Q6AI14 798 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 SFRP4Q6FHJ7 346 aaPredicted RBP3.41□□□□□ -1.86
CD44-234ENST00000531873 FOXR2Q6PJQ5 311 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 PIK3AP1Q6ZUJ8 805 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 CIR1Q86X95 450 aaPredicted RBP3.41□□□□□ -1.86
CD44-234ENST00000531873 TICAM2Q86XR7 235 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 GSPT2Q8IYD1 628 aaKnown RBP3.41□□□□□ -1.86
CD44-234ENST00000531873 PCYOX1LQ8NBM8 494 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 CEP70Q8NHQ1 597 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 Q8TCH9 128 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 ABHD5Q8WTS1 349 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 C3orf49Q96BT1 292 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 FAM136AQ96C01 138 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 WWC2-AS2Q96NR7 200 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 HAPLN3Q96S86 360 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 ADAM2Q99965 735 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 C17orf80Q9BSJ5 609 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 MECRQ9BV79 373 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 VN1R3Q9BXE9 311 aa3.41□□□□□ -1.86
CD44-234ENST00000531873 OSBPL5Q9H0X9 879 aaPredicted RBP3.41□□□□□ -1.86
CD44-234ENST00000531873 UNC45AQ9H3U1 944 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms