RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 EXD1Q8NHP7 514 aa22.2■■□□□ 1.15
VPS28-212ENST00000530836 MAIP1Q8WWC4 291 aa22.2■■□□□ 1.15
VPS28-212ENST00000530836 FUBP3Q96I24 572 aaKnown RBP eCLIP22.2■■□□□ 1.15
VPS28-212ENST00000530836 RBM41Q96IZ5 413 aaKnown RBP22.2■■□□□ 1.15
VPS28-212ENST00000530836 SMOQ99835 787 aa22.2■■□□□ 1.15
VPS28-212ENST00000530836 DMAP1Q9NPF5 467 aaPredicted RBP22.2■■□□□ 1.15
VPS28-212ENST00000530836 ENTPD7Q9NQZ7 604 aa22.2■■□□□ 1.15
VPS28-212ENST00000530836 EHD2Q9NZN4 543 aa22.2■■□□□ 1.15
VPS28-212ENST00000530836 PIK3R2O00459 728 aa22.2■■□□□ 1.14
VPS28-212ENST00000530836 KRIT1O00522 736 aa22.2■■□□□ 1.14
VPS28-212ENST00000530836 CSPG5O95196 566 aa22.2■■□□□ 1.14
VPS28-212ENST00000530836 ZRANB2O95218 330 aaKnown RBP eCLIP22.2■■□□□ 1.142e-7■■□□□ 13.6
VPS28-212ENST00000530836 RNASE9P60153 205 aaKnown RBP22.2■■□□□ 1.14
VPS28-212ENST00000530836 C2orf54Q08AI8 447 aa22.2■■□□□ 1.14
VPS28-212ENST00000530836 RAB41Q5JT25 222 aa22.2■■□□□ 1.14
VPS28-212ENST00000530836 CPNE8Q86YQ8 564 aa22.2■■□□□ 1.14
VPS28-212ENST00000530836 EMC1Q8N766 993 aa22.2■■□□□ 1.14
VPS28-212ENST00000530836 MRPL43Q8N983 215 aaKnown RBP22.2■■□□□ 1.14
VPS28-212ENST00000530836 RXFP2Q8WXD0 754 aa22.2■■□□□ 1.14
VPS28-212ENST00000530836 CNGB3Q9NQW8 809 aa22.2■■□□□ 1.14
VPS28-212ENST00000530836 SMARCAL1Q9NZC9 954 aa22.2■■□□□ 1.14
VPS28-212ENST00000530836 HSF2BPO75031 334 aa22.19■■□□□ 1.14
VPS28-212ENST00000530836 BEST1O76090 585 aa22.19■■□□□ 1.14
VPS28-212ENST00000530836 CXCL14O95715 111 aa22.19■■□□□ 1.14
VPS28-212ENST00000530836 SDC4P31431 198 aa22.19■■□□□ 1.14
VPS28-212ENST00000530836 TAS2R40P59535 323 aa22.19■■□□□ 1.14
VPS28-212ENST00000530836 MRPS5P82675 430 aaKnown RBP22.19■■□□□ 1.14
VPS28-212ENST00000530836 DSG1Q02413 1049 aa22.19■■□□□ 1.14
VPS28-212ENST00000530836 ADIGQ0VDE8 80 aa22.19■■□□□ 1.14
VPS28-212ENST00000530836 ZNF211Q13398 564 aaPredicted RBP22.19■■□□□ 1.14
VPS28-212ENST00000530836 SMC1AQ14683 1233 aaKnown RBP22.19■■□□□ 1.14
VPS28-212ENST00000530836 NAA30Q147X3 362 aaPredicted RBP22.19■■□□□ 1.14
VPS28-212ENST00000530836 CCDC142Q17RM4 750 aa22.19■■□□□ 1.14
VPS28-212ENST00000530836 ANKS3Q6ZW76 656 aa22.19■■□□□ 1.14
VPS28-212ENST00000530836 LRRTM3Q86VH5 581 aa22.19■■□□□ 1.14
VPS28-212ENST00000530836 RCOR2Q8IZ40 523 aa22.19■■□□□ 1.14
VPS28-212ENST00000530836 SCML4Q8N228 414 aa22.19■■□□□ 1.14
VPS28-212ENST00000530836 RUBCNQ92622 972 aa22.19■■□□□ 1.14
VPS28-212ENST00000530836 TTPALQ9BTX7 342 aa22.19■■□□□ 1.14
VPS28-212ENST00000530836 RBM12Q9NTZ6 932 aaKnown RBP22.19■■□□□ 1.14
VPS28-212ENST00000530836 IRAK3Q9Y616 596 aa22.19■■□□□ 1.14
VPS28-212ENST00000530836 TARSL2A2RTX5 802 aaKnown RBP22.18■■□□□ 1.14
VPS28-212ENST00000530836 LILRB3O75022 631 aa22.18■■□□□ 1.14
VPS28-212ENST00000530836 LRCH4O75427 683 aa22.18■■□□□ 1.14
VPS28-212ENST00000530836 MCM3P25205 808 aa22.18■■□□□ 1.14
VPS28-212ENST00000530836 PTPN9P43378 593 aa22.18■■□□□ 1.14
VPS28-212ENST00000530836 GLUD2P49448 558 aa22.18■■□□□ 1.14
VPS28-212ENST00000530836 TKTL1P51854 596 aa22.18■■□□□ 1.14
VPS28-212ENST00000530836 COPS2P61201 443 aa22.18■■□□□ 1.14
VPS28-212ENST00000530836 CTXN3Q4LDR2 81 aa22.18■■□□□ 1.14
VPS28-212ENST00000530836 ODF2Q5BJF6 829 aa22.18■■□□□ 1.14
VPS28-212ENST00000530836 PLPP4Q5VZY2 271 aa22.18■■□□□ 1.14
VPS28-212ENST00000530836 KIAA1841Q6NSI8 718 aa22.18■■□□□ 1.14
VPS28-212ENST00000530836 CEP57Q86XR8 500 aa22.18■■□□□ 1.14
VPS28-212ENST00000530836 GPR65Q8IYL9 337 aa22.18■■□□□ 1.14
VPS28-212ENST00000530836 KHSRPQ92945 711 aaKnown RBP eCLIP22.18■■□□□ 1.14
VPS28-212ENST00000530836 B3GALT6Q96L58 329 aa22.18■■□□□ 1.14
VPS28-212ENST00000530836 MRPL17Q9NRX2 175 aaKnown RBP22.18■■□□□ 1.14
VPS28-212ENST00000530836 SSX2IPQ9Y2D8 614 aa22.18■■□□□ 1.14
VPS28-212ENST00000530836 URODP06132 367 aa22.17■■□□□ 1.14
VPS28-212ENST00000530836 FLT3P36888 993 aa22.17■■□□□ 1.14
VPS28-212ENST00000530836 VSTM1Q6UX27 236 aa22.17■■□□□ 1.14
VPS28-212ENST00000530836 ZMIZ2Q8NF64 920 aa22.17■■□□□ 1.14
VPS28-212ENST00000530836 AUTS2Q8WXX7 1259 aa22.17■■□□□ 1.14
VPS28-212ENST00000530836 PIWIL1Q96J94 861 aaKnown RBP22.17■■□□□ 1.14
VPS28-212ENST00000530836 NSUN3Q9H649 340 aaKnown RBP22.17■■□□□ 1.14
VPS28-212ENST00000530836 TMLHEQ9NVH6 421 aa22.17■■□□□ 1.14
VPS28-212ENST00000530836 C2orf71A6NGG8 1288 aa22.17■■□□□ 1.14
VPS28-212ENST00000530836 HIDE1A8MVS5 230 aa22.17■■□□□ 1.14
VPS28-212ENST00000530836 BDNFP23560 247 aa22.17■■□□□ 1.14
VPS28-212ENST00000530836 YWHAZP63104 245 aaKnown RBP22.17■■□□□ 1.14
VPS28-212ENST00000530836 SLC39A12Q504Y0 691 aa22.17■■□□□ 1.14
VPS28-212ENST00000530836 RTP2Q5QGT7 225 aa22.17■■□□□ 1.14
VPS28-212ENST00000530836 SLC13A5Q86YT5 568 aaPredicted RBP22.17■■□□□ 1.14
VPS28-212ENST00000530836 IRGQQ8WZA9 623 aa22.17■■□□□ 1.14
VPS28-212ENST00000530836 TMEM209Q96SK2 561 aa22.17■■□□□ 1.14
VPS28-212ENST00000530836 TRIM62Q9BVG3 475 aa22.17■■□□□ 1.14
VPS28-212ENST00000530836 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP22.17■■□□□ 1.14
VPS28-212ENST00000530836 PLXNA4Q9HCM2 1894 aa22.16■■□□□ 1.14
VPS28-212ENST00000530836 HHLA1C9JL84 531 aa22.16■■□□□ 1.14
VPS28-212ENST00000530836 SLC25A11Q02978 314 aaKnown RBP22.16■■□□□ 1.14
VPS28-212ENST00000530836 ADCY1Q08828 1119 aa22.16■■□□□ 1.14
VPS28-212ENST00000530836 CCDC14Q49A88 953 aa22.16■■□□□ 1.14
VPS28-212ENST00000530836 C8orf74Q6P047 294 aa22.16■■□□□ 1.14
VPS28-212ENST00000530836 RIN2Q8WYP3 895 aaPredicted RBP22.16■■□□□ 1.14
VPS28-212ENST00000530836 ANKRD7Q92527 254 aa22.16■■□□□ 1.14
VPS28-212ENST00000530836 TSC1Q92574 1164 aa22.16■■□□□ 1.14
VPS28-212ENST00000530836 KCNK16Q96T55 309 aa22.16■■□□□ 1.14
VPS28-212ENST00000530836 DDX23Q9BUQ8 820 aaKnown RBP22.16■■□□□ 1.14
VPS28-212ENST00000530836 SLITRK6Q9H5Y7 841 aa22.16■■□□□ 1.14
VPS28-212ENST00000530836 ARGLU1Q9NWB6 273 aaPredicted RBP22.16■■□□□ 1.14
VPS28-212ENST00000530836 USP18Q9UMW8 372 aa22.16■■□□□ 1.14
VPS28-212ENST00000530836 COL4A4P53420 1690 aaPredicted RBP22.15■■□□□ 1.14
VPS28-212ENST00000530836 C2CD2LO14523 706 aa22.15■■□□□ 1.14
VPS28-212ENST00000530836 DAB1O75553 588 aa22.15■■□□□ 1.14
VPS28-212ENST00000530836 GRAP2O75791 330 aa22.15■■□□□ 1.14
VPS28-212ENST00000530836 PTPN7P35236 360 aa22.15■■□□□ 1.14
VPS28-212ENST00000530836 MATKP42679 507 aa22.15■■□□□ 1.14
VPS28-212ENST00000530836 TAF5Q15542 800 aa22.15■■□□□ 1.14
VPS28-212ENST00000530836 TCEAL5Q5H9L2 206 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms