RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 IMPG2Q9BZV3 1241 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 IRF2BPLQ9H1B7 796 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 METTL14Q9HCE5 456 aaKnown RBP11.26□□□□□ -0.61
CD44-227ENST00000528086 THG1LQ9NWX6 298 aaKnown RBP11.26□□□□□ -0.61
CD44-227ENST00000528086 COMMD8Q9NX08 183 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 CFAP97Q9P2B7 532 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 HOOK1Q9UJC3 728 aaKnown RBP11.26□□□□□ -0.61
CD44-227ENST00000528086 AJAP1Q9UKB5 411 aaPredicted RBP11.26□□□□□ -0.61
CD44-227ENST00000528086 NUDT5Q9UKK9 219 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 FBXO4Q9UKT5 387 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 HCN2Q9UL51 889 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 MRPS17Q9Y2R5 130 aaKnown RBP11.26□□□□□ -0.61
CD44-227ENST00000528086 O00370 1275 aa11.25□□□□□ -0.61
CD44-227ENST00000528086 STX10O60499 249 aa11.25□□□□□ -0.61
CD44-227ENST00000528086 TLR5O60602 858 aa11.25□□□□□ -0.61
CD44-227ENST00000528086 CLSTN1O94985 981 aa11.25□□□□□ -0.61
CD44-227ENST00000528086 SLC6A11P48066 632 aa11.25□□□□□ -0.61
CD44-227ENST00000528086 TUBP50607 506 aa11.25□□□□□ -0.61
CD44-227ENST00000528086 ZNF528Q3MIS6 628 aa11.25□□□□□ -0.61
CD44-227ENST00000528086 HECTD3Q5T447 861 aa11.25□□□□□ -0.61
CD44-227ENST00000528086 GJB7Q6PEY0 223 aa11.25□□□□□ -0.61
CD44-227ENST00000528086 RRAGAQ7L523 313 aa11.25□□□□□ -0.61
CD44-227ENST00000528086 PIGZQ86VD9 579 aa11.25□□□□□ -0.61
CD44-227ENST00000528086 BBS7Q8IWZ6 715 aa11.25□□□□□ -0.61
CD44-227ENST00000528086 EHBP1Q8NDI1 1231 aa11.25□□□□□ -0.61
CD44-227ENST00000528086 TTC16Q8NEE8 873 aa11.25□□□□□ -0.61
CD44-227ENST00000528086 PNPLA8Q9NP80 782 aa11.25□□□□□ -0.61
CD44-227ENST00000528086 CYLDQ9NQC7 956 aa11.25□□□□□ -0.61
CD44-227ENST00000528086 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.25□□□□□ -0.61
CD44-227ENST00000528086 RWDD2AQ9UIY3 292 aa11.25□□□□□ -0.61
CD44-227ENST00000528086 ATP8B3O60423 1300 aa11.25□□□□□ -0.61
CD44-227ENST00000528086 K7EQS6 105 aa11.24□□□□□ -0.61
CD44-227ENST00000528086 TRIM24O15164 1050 aa11.24□□□□□ -0.61
CD44-227ENST00000528086 NCAM2O15394 837 aa11.24□□□□□ -0.61
CD44-227ENST00000528086 LAMTOR5O43504 91 aa11.24□□□□□ -0.61
CD44-227ENST00000528086 PAPSS2O95340 614 aaPredicted RBP11.24□□□□□ -0.61
CD44-227ENST00000528086 KLKB1P03952 638 aa11.24□□□□□ -0.61
CD44-227ENST00000528086 MBL2P11226 248 aaPredicted RBP11.24□□□□□ -0.61
CD44-227ENST00000528086 HNRNPLP14866 589 aaKnown RBP eCLIP11.24□□□□□ -0.61
CD44-227ENST00000528086 PPP1R2P41236 205 aa11.24□□□□□ -0.61
CD44-227ENST00000528086 PDE4CQ08493 712 aa11.24□□□□□ -0.61
CD44-227ENST00000528086 STIM1Q13586 685 aa11.24□□□□□ -0.61
CD44-227ENST00000528086 DHCR24Q15392 516 aa11.24□□□□□ -0.61
CD44-227ENST00000528086 CCDC40Q4G0X9 1142 aa11.24□□□□□ -0.61
CD44-227ENST00000528086 CCDC186Q7Z3E2 898 aa11.24□□□□□ -0.61
CD44-227ENST00000528086 SPEM1Q8N4L4 309 aa11.24□□□□□ -0.61
CD44-227ENST00000528086 ANKRD52Q8NB46 1076 aa11.24□□□□□ -0.61
CD44-227ENST00000528086 PDZD8Q8NEN9 1154 aa11.24□□□□□ -0.61
CD44-227ENST00000528086 UBA3Q8TBC4 463 aa11.24□□□□□ -0.61
CD44-227ENST00000528086 SIX2Q9NPC8 291 aa11.24□□□□□ -0.61
CD44-227ENST00000528086 ACP6Q9NPH0 428 aa11.24□□□□□ -0.61
CD44-227ENST00000528086 TSPAN16Q9UKR8 245 aa11.24□□□□□ -0.61
CD44-227ENST00000528086 CNTN6Q9UQ52 1028 aa11.24□□□□□ -0.61
CD44-227ENST00000528086 SPAG17Q6Q759 2223 aa11.24□□□□□ -0.61
CD44-227ENST00000528086 DNAH14Q0VDD8 3507 aa11.23□□□□□ -0.61
CD44-227ENST00000528086 BICDL2A1A5D9 508 aa11.23□□□□□ -0.61
CD44-227ENST00000528086 BECN2A8MW95 431 aa11.23□□□□□ -0.61
CD44-227ENST00000528086 P4HA2O15460 535 aa11.23□□□□□ -0.61
CD44-227ENST00000528086 HRO43593 1189 aa11.23□□□□□ -0.61
CD44-227ENST00000528086 IFNAR2P48551 515 aa11.23□□□□□ -0.61
CD44-227ENST00000528086 SRSF5Q13243 272 aaKnown RBP11.23□□□□□ -0.61
CD44-227ENST00000528086 GOLGA7BQ2TAP0 167 aa11.23□□□□□ -0.61
CD44-227ENST00000528086 DGKKQ5KSL6 1271 aa11.23□□□□□ -0.61
CD44-227ENST00000528086 LY6G5CQ5SRR4 150 aa11.23□□□□□ -0.61
CD44-227ENST00000528086 PM20D1Q6GTS8 502 aa11.23□□□□□ -0.61
CD44-227ENST00000528086 CC2D1AQ6P1N0 951 aaPredicted RBP11.23□□□□□ -0.61
CD44-227ENST00000528086 Q6ZNB5 142 aa11.23□□□□□ -0.61
CD44-227ENST00000528086 RBM43Q6ZSC3 357 aaKnown RBP11.23□□□□□ -0.61
CD44-227ENST00000528086 TMEM25Q86YD3 366 aa11.23□□□□□ -0.61
CD44-227ENST00000528086 ETFBKMTQ8IXQ9 262 aa11.23□□□□□ -0.61
CD44-227ENST00000528086 DCLK2Q8N568 766 aa11.23□□□□□ -0.61
CD44-227ENST00000528086 KIAA1958Q8N8K9 716 aa11.23□□□□□ -0.61
CD44-227ENST00000528086 SLC35F5Q8WV83 523 aa11.23□□□□□ -0.61
CD44-227ENST00000528086 ATP2A3Q93084 1043 aa11.23□□□□□ -0.61
CD44-227ENST00000528086 NKD2Q969F2 451 aaPredicted RBP11.23□□□□□ -0.61
CD44-227ENST00000528086 CNOT6LQ96LI5 555 aaKnown RBP11.23□□□□□ -0.61
CD44-227ENST00000528086 P2RY13Q9BPV8 354 aa11.23□□□□□ -0.61
CD44-227ENST00000528086 CRACR2AQ9BSW2 395 aa11.23□□□□□ -0.61
CD44-227ENST00000528086 UBXN6Q9BZV1 441 aa11.23□□□□□ -0.61
CD44-227ENST00000528086 INTS2Q9H0H0 1204 aaKnown RBP11.23□□□□□ -0.61
CD44-227ENST00000528086 FAM124BQ9H5Z6 455 aaPredicted RBP11.23□□□□□ -0.61
CD44-227ENST00000528086 ZSCAN32Q9NX65 697 aa11.23□□□□□ -0.61
CD44-227ENST00000528086 EHD2Q9NZN4 543 aa11.23□□□□□ -0.61
CD44-227ENST00000528086 ABCA7Q8IZY2 2146 aa11.23□□□□□ -0.61
CD44-227ENST00000528086 CEP250Q9BV73 2442 aa11.23□□□□□ -0.61
CD44-227ENST00000528086 E2F8A0AVK6 867 aa11.22□□□□□ -0.61
CD44-227ENST00000528086 CHURC1-FNTBB4DL54 471 aa11.22□□□□□ -0.61
CD44-227ENST00000528086 RNF40O75150 1001 aa11.22□□□□□ -0.61
CD44-227ENST00000528086 AFPP02771 609 aaKnown RBP11.22□□□□□ -0.61
CD44-227ENST00000528086 RARGP13631 454 aa11.22□□□□□ -0.61
CD44-227ENST00000528086 SLC9A1P19634 815 aa11.22□□□□□ -0.61
CD44-227ENST00000528086 TGM1P22735 817 aa11.22□□□□□ -0.61
CD44-227ENST00000528086 BRD2P25440 801 aaKnown RBP11.22□□□□□ -0.61
CD44-227ENST00000528086 ANP32AP39687 249 aaKnown RBP11.22□□□□□ -0.61
CD44-227ENST00000528086 CXCL12P48061 93 aa11.22□□□□□ -0.61
CD44-227ENST00000528086 FNTBP49356 437 aa11.22□□□□□ -0.61
CD44-227ENST00000528086 MIIPQ5JXC2 388 aa11.22□□□□□ -0.61
CD44-227ENST00000528086 EMC10Q5UCC4 262 aa11.22□□□□□ -0.61
CD44-227ENST00000528086 PMF1Q6P1K2 205 aa11.22□□□□□ -0.61
CD44-227ENST00000528086 TMEM270Q6UE05 265 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms