RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 FPR3P25089 353 aa5.6□□□□□ -1.51
CD44-223ENST00000526553 RBL1P28749 1068 aa5.6□□□□□ -1.51
CD44-223ENST00000526553 STT3AP46977 705 aa5.6□□□□□ -1.51
CD44-223ENST00000526553 TM4SF4P48230 202 aa5.6□□□□□ -1.51
CD44-223ENST00000526553 PSG6Q00889 435 aa5.6□□□□□ -1.51
CD44-223ENST00000526553 CLCA4Q14CN2 919 aa5.6□□□□□ -1.51
CD44-223ENST00000526553 RNASE12Q5GAN4 147 aaKnown RBP5.6□□□□□ -1.51
CD44-223ENST00000526553 KSR2Q6VAB6 950 aa5.6□□□□□ -1.51
CD44-223ENST00000526553 CATSPERGQ6ZRH7 1159 aa5.6□□□□□ -1.51
CD44-223ENST00000526553 USP49Q70CQ1 688 aa5.6□□□□□ -1.51
CD44-223ENST00000526553 BEND5Q7L4P6 421 aa5.6□□□□□ -1.51
CD44-223ENST00000526553 LIX1LQ8IVB5 337 aa5.6□□□□□ -1.51
CD44-223ENST00000526553 SRRM1Q8IYB3 904 aaKnown RBP5.6□□□□□ -1.51
CD44-223ENST00000526553 CCDC33Q8N5R6 958 aa5.6□□□□□ -1.51
CD44-223ENST00000526553 WDYHV1Q96HA8 205 aa5.6□□□□□ -1.51
CD44-223ENST00000526553 HIST1H2AAQ96QV6 131 aa5.6□□□□□ -1.51
CD44-223ENST00000526553 CIPCQ9C0C6 399 aa5.6□□□□□ -1.51
CD44-223ENST00000526553 SNX15Q9NRS6 342 aa5.6□□□□□ -1.51
CD44-223ENST00000526553 FLRT1Q9NZU1 646 aa5.6□□□□□ -1.51
CD44-223ENST00000526553 MYO1AQ9UBC5 1043 aa5.6□□□□□ -1.51
CD44-223ENST00000526553 HPSEQ9Y251 543 aa5.6□□□□□ -1.51
CD44-223ENST00000526553 A0A087WZ62 844 aa5.59□□□□□ -1.51
CD44-223ENST00000526553 TMPRSS11DO60235 418 aa5.59□□□□□ -1.51
CD44-223ENST00000526553 SNX2O60749 519 aa5.59□□□□□ -1.51
CD44-223ENST00000526553 MYL4P12829 197 aa5.59□□□□□ -1.51
CD44-223ENST00000526553 TUBA4AP68366 448 aa5.59□□□□□ -1.51
CD44-223ENST00000526553 FOXF2Q12947 444 aa5.59□□□□□ -1.51
CD44-223ENST00000526553 ST3GAL2Q16842 350 aa5.59□□□□□ -1.51
CD44-223ENST00000526553 TMEM63BQ5T3F8 832 aa5.59□□□□□ -1.51
CD44-223ENST00000526553 PRAMEF17Q5VTA0 474 aa5.59□□□□□ -1.51
CD44-223ENST00000526553 KLHDC7AQ5VTJ3 777 aa5.59□□□□□ -1.51
CD44-223ENST00000526553 KIAA1614Q5VZ46 1190 aa5.59□□□□□ -1.51
CD44-223ENST00000526553 USP17L6PQ6QN14 398 aa5.59□□□□□ -1.51
CD44-223ENST00000526553 DPP9Q86TI2 863 aa5.59□□□□□ -1.51
CD44-223ENST00000526553 MBD3L2Q8NHZ7 208 aaPredicted RBP5.59□□□□□ -1.51
CD44-223ENST00000526553 MMS19Q96T76 1030 aa5.59□□□□□ -1.51
CD44-223ENST00000526553 TBCBQ99426 244 aa5.59□□□□□ -1.51
CD44-223ENST00000526553 ARNT2Q9HBZ2 717 aa5.59□□□□□ -1.51
CD44-223ENST00000526553 TFCP2L1Q9NZI6 479 aa5.59□□□□□ -1.51
CD44-223ENST00000526553 NKX1-2Q9UD57 310 aaPredicted RBP5.59□□□□□ -1.51
CD44-223ENST00000526553 STEAP1Q9UHE8 339 aa5.59□□□□□ -1.51
CD44-223ENST00000526553 COL15A1P39059 1388 aa5.58□□□□□ -1.52
CD44-223ENST00000526553 CGB1A6NKQ9 187 aa5.58□□□□□ -1.52
CD44-223ENST00000526553 TISP43B9A030 160 aa5.58□□□□□ -1.52
CD44-223ENST00000526553 POC1B-GALNT4F8VUJ3 575 aa5.58□□□□□ -1.52
CD44-223ENST00000526553 SMIM22K7EJ46 135 aa5.58□□□□□ -1.52
CD44-223ENST00000526553 APOL1O14791 398 aa5.58□□□□□ -1.52
CD44-223ENST00000526553 KCNQ3O43525 872 aa5.58□□□□□ -1.52
CD44-223ENST00000526553 EXOC3O60645 756 aa5.58□□□□□ -1.52
CD44-223ENST00000526553 LATS1O95835 1130 aa5.58□□□□□ -1.52
CD44-223ENST00000526553 NBPF7P0C2Y1 421 aaPredicted RBP5.58□□□□□ -1.52
CD44-223ENST00000526553 NHLRC4P0CG21 123 aaPredicted RBP5.58□□□□□ -1.52
CD44-223ENST00000526553 CREB1P16220 341 aa5.58□□□□□ -1.52
CD44-223ENST00000526553 DIO1P49895 249 aa5.58□□□□□ -1.52
CD44-223ENST00000526553 RENBPP51606 427 aa5.58□□□□□ -1.52
CD44-223ENST00000526553 COPAP53621 1224 aa5.58□□□□□ -1.52
CD44-223ENST00000526553 LMAN2Q12907 356 aa5.58□□□□□ -1.52
CD44-223ENST00000526553 TMEM119Q4V9L6 283 aa5.58□□□□□ -1.52
CD44-223ENST00000526553 ZNF782Q6ZMW2 699 aaPredicted RBP5.58□□□□□ -1.52
CD44-223ENST00000526553 GALNT4Q8N4A0 578 aa5.58□□□□□ -1.52
CD44-223ENST00000526553 LINC01465Q8N7H1 131 aa5.58□□□□□ -1.52
CD44-223ENST00000526553 EIF2AQ9BY44 585 aaKnown RBP5.58□□□□□ -1.52
CD44-223ENST00000526553 SEMA4CQ9C0C4 833 aa5.58□□□□□ -1.52
CD44-223ENST00000526553 SLC25A32Q9H2D1 315 aa5.58□□□□□ -1.52
CD44-223ENST00000526553 RASA4BC9J798 803 aa5.57□□□□□ -1.52
CD44-223ENST00000526553 BTBD19C9JJ37 291 aa5.57□□□□□ -1.52
CD44-223ENST00000526553 UBE2Q2LH0YL09 131 aa5.57□□□□□ -1.52
CD44-223ENST00000526553 RASA4O43374 803 aa5.57□□□□□ -1.52
CD44-223ENST00000526553 CHRM5P08912 532 aaPredicted RBP5.57□□□□□ -1.52
CD44-223ENST00000526553 NTSR1P30989 418 aa5.57□□□□□ -1.52
CD44-223ENST00000526553 HTR7P34969 479 aa5.57□□□□□ -1.52
CD44-223ENST00000526553 GRM1Q13255 1194 aa5.57□□□□□ -1.52
CD44-223ENST00000526553 C4orf46Q504U0 113 aa5.57□□□□□ -1.52
CD44-223ENST00000526553 RRAGBQ5VZM2 374 aa5.57□□□□□ -1.52
CD44-223ENST00000526553 BCDIN3DQ7Z5W3 292 aaKnown RBP5.57□□□□□ -1.52
CD44-223ENST00000526553 CHSY1Q86X52 802 aa5.57□□□□□ -1.52
CD44-223ENST00000526553 METTL25Q8N6Q8 603 aa5.57□□□□□ -1.52
CD44-223ENST00000526553 NGDNQ8NEJ9 315 aaKnown RBP5.57□□□□□ -1.52
CD44-223ENST00000526553 LRRC46Q96FV0 321 aa5.57□□□□□ -1.52
CD44-223ENST00000526553 RITA1Q96K30 269 aa5.57□□□□□ -1.52
CD44-223ENST00000526553 FYTTD1Q96QD9 318 aaKnown RBP5.57□□□□□ -1.52
CD44-223ENST00000526553 MAGEB5Q9BZ81 275 aa5.57□□□□□ -1.52
CD44-223ENST00000526553 ZBTB26Q9HCK0 441 aa5.57□□□□□ -1.52
CD44-223ENST00000526553 ASIC5Q9NY37 505 aa5.57□□□□□ -1.52
CD44-223ENST00000526553 SLC27A6Q9Y2P4 619 aa5.57□□□□□ -1.52
CD44-223ENST00000526553 PRRT4C9JH25 899 aa5.56□□□□□ -1.52
CD44-223ENST00000526553 ADAMTS3O15072 1205 aa5.56□□□□□ -1.52
CD44-223ENST00000526553 USP1O94782 785 aa5.56□□□□□ -1.52
CD44-223ENST00000526553 MYL3P08590 195 aa5.56□□□□□ -1.52
CD44-223ENST00000526553 CERS1P27544 350 aa5.56□□□□□ -1.52
CD44-223ENST00000526553 SLC5A2P31639 672 aa5.56□□□□□ -1.52
CD44-223ENST00000526553 ATICP31939 592 aa5.56□□□□□ -1.52
CD44-223ENST00000526553 MCM5P33992 734 aa5.56□□□□□ -1.52
CD44-223ENST00000526553 LONRF1Q17RB8 773 aa5.56□□□□□ -1.52
CD44-223ENST00000526553 CERKLQ49MI3 558 aaPredicted RBP5.56□□□□□ -1.52
CD44-223ENST00000526553 CLEC9AQ6UXN8 241 aa5.56□□□□□ -1.52
CD44-223ENST00000526553 SERPINA13PQ6UXR4 307 aa5.56□□□□□ -1.52
CD44-223ENST00000526553 KRT73Q86Y46 540 aa5.56□□□□□ -1.52
CD44-223ENST00000526553 CCDC150Q8NCX0 1101 aa5.56□□□□□ -1.52
CD44-223ENST00000526553 BRI3BPQ8WY22 251 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms