RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 OGDHLQ9ULD0 1010 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 G3BP2Q9UN86 482 aaKnown RBP2.86□□□□□ -1.95
CD44-216ENST00000525293 PAXBP1Q9Y5B6 917 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 ZNF521Q96K83 1311 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 CYP2D7A0A087X1C5 515 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 RAB27BO00194 218 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 CD3EAPO15446 510 aaKnown RBP2.85□□□□□ -1.95
CD44-216ENST00000525293 CCP110O43303 1012 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 FRS3O43559 492 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 TSPAN6O43657 245 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 RRP9O43818 475 aaKnown RBP2.85□□□□□ -1.95
CD44-216ENST00000525293 MOSPD3O75425 235 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 PIAS2O75928 621 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 USP1O94782 785 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 PARNO95453 639 aaKnown RBP2.85□□□□□ -1.95
CD44-216ENST00000525293 TOP3BO95985 862 aaKnown RBP2.85□□□□□ -1.95
CD44-216ENST00000525293 MT-CO3P00414 261 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 MYF5P13349 255 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 HGFP14210 728 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 CREB1P16220 341 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 KLRC1P26715 233 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 IL1R2P27930 398 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 PTGER1P34995 402 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 MMP13P45452 471 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 CACNB3P54284 484 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 TIRAPP58753 221 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 RPS16P62249 146 aaKnown RBP2.85□□□□□ -1.95
CD44-216ENST00000525293 LMAN2Q12907 356 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 STK3Q13188 491 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 ARHGEF7Q14155 803 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 SLC29A2Q14542 456 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 NPY5RQ15761 445 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 KIAA0753Q2KHM9 967 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 AWAT1Q58HT5 328 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 PPP4R4Q6NUP7 873 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 CLEC4GQ6UXB4 293 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 CCDC149Q6ZUS6 474 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 PTCHD4Q6ZW05 846 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 MYO1HQ8N1T3 1032 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 SDR16C5Q8N3Y7 309 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 ZNF366Q8N895 744 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 MORC4Q8TE76 937 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 LRTOMTQ8WZ04 291 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 PMM1Q92871 262 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 APIPQ96GX9 242 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 FCRL4Q96PJ5 515 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 FYTTD1Q96QD9 318 aaKnown RBP2.85□□□□□ -1.95
CD44-216ENST00000525293 EFHD1Q9BUP0 239 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 VN1R3Q9BXE9 311 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 LRRC27Q9C0I9 530 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 CHST8Q9H2A9 424 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 ZNF287Q9HBT7 754 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 COL20A1Q9P218 1284 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 MGAT4CQ9UBM8 478 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 ITGB1BP2Q9UKP3 347 aa2.85□□□□□ -1.95
CD44-216ENST00000525293 TTC36A6NLP5 189 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 VSTM5A8MXK1 200 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 BTBD19C9JJ37 291 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 TMEM232C9JQI7 657 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 M0R3H8 397 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 EXOC5O00471 708 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 FCHO1O14526 889 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 TPP1O14773 563 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 PPEF2O14830 753 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 SPRY2O43597 315 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 CREB3O43889 395 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 BCAR3O75815 825 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 APEHP13798 732 aaKnown RBP2.84□□□□□ -1.95
CD44-216ENST00000525293 TPH1P17752 444 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 ACVR2AP27037 513 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 DIO1P49895 249 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 CPT1AP50416 773 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 GATMP50440 423 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 PGDP52209 483 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 TIAL1Q01085 375 aaKnown RBP eCLIP2.84□□□□□ -1.95
CD44-216ENST00000525293 GRM3Q14832 879 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 RABEP1Q15276 862 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 TRIP6Q15654 476 aaKnown RBP2.84□□□□□ -1.95
CD44-216ENST00000525293 ZNF750Q32MQ0 723 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 DARS2Q6PI48 645 aaKnown RBP2.84□□□□□ -1.95
CD44-216ENST00000525293 UNC13DQ70J99 1090 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 SESTD1Q86VW0 696 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 C11orf44Q8N8P7 122 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 Q8N9P0 234 aaPredicted RBP2.84□□□□□ -1.95
CD44-216ENST00000525293 PRSS3P2Q8NHM4 247 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 ZBTB9Q96C00 473 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 ZNF48Q96MX3 618 aaPredicted RBP2.84□□□□□ -1.95
CD44-216ENST00000525293 FAM118BQ9BPY3 351 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 VPS16Q9H269 839 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 SNX15Q9NRS6 342 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 TUBA8Q9NY65 449 aaPredicted RBP2.84□□□□□ -1.95
CD44-216ENST00000525293 ELOVL5Q9NYP7 299 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 MID2Q9UJV3 735 aa2.84□□□□□ -1.95
CD44-216ENST00000525293 SCAF8Q9UPN6 1271 aaKnown RBP2.84□□□□□ -1.95
CD44-216ENST00000525293 GOLGA6CA6NDK9 693 aa2.83□□□□□ -1.96
CD44-216ENST00000525293 GOLGA6BA6NDN3 693 aa2.83□□□□□ -1.96
CD44-216ENST00000525293 E5RJQ4 531 aa2.83□□□□□ -1.96
CD44-216ENST00000525293 AGPSO00116 658 aa2.83□□□□□ -1.96
CD44-216ENST00000525293 GOLIM4O00461 696 aa2.83□□□□□ -1.96
CD44-216ENST00000525293 DSCR3O14972 297 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms