RNA–Protein interactions for RNA: ENST00000522843.5

SDCBP-210, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 764 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-210ENST00000522843 VPS45Q9NRW7 570 aa7.35□□□□□ -1.23
SDCBP-210ENST00000522843 POLR3BQ9NW08 1133 aaPredicted RBP7.35□□□□□ -1.23
SDCBP-210ENST00000522843 MSRB2Q9Y3D2 182 aa7.35□□□□□ -1.23
SDCBP-210ENST00000522843 NEUROG3Q9Y4Z2 214 aa7.35□□□□□ -1.23
SDCBP-210ENST00000522843 PCDHGA5Q9Y5G8 931 aa7.35□□□□□ -1.23
SDCBP-210ENST00000522843 TENM4Q6N022 2769 aa7.35□□□□□ -1.23
SDCBP-210ENST00000522843 UNC79Q9P2D8 2635 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 LNP1A1A4G5 178 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 WDR27A2RRH5 827 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 SLC22A31A6NKX4 558 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 MSH4O15457 936 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 CHMP2AO43633 222 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 TSPAN1O60635 241 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 TADA2AO75478 443 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 RPP40O75818 363 aaKnown RBP7.34□□□□□ -1.23
SDCBP-210ENST00000522843 CEACAM1P13688 526 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 PSMC3P17980 439 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 CSRP1P21291 193 aaKnown RBP7.34□□□□□ -1.23
SDCBP-210ENST00000522843 AKAP5P24588 427 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 CIITAP33076 1130 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 SETQ01105 290 aaPredicted RBP7.34□□□□□ -1.23
SDCBP-210ENST00000522843 PRR16Q569H4 304 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 XKR3Q5GH77 459 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 FAM171A1Q5VUB5 890 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 PLA2G4FQ68DD2 849 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 B3GNT9Q6UX72 402 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 CD300LGQ6UXG3 332 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 ANO5Q75V66 913 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 RALYLQ86SE5 291 aaKnown RBP7.34□□□□□ -1.23
SDCBP-210ENST00000522843 FANCBQ8NB91 859 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 DEFB124Q8NES8 71 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 CPB2Q96IY4 423 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 TTPALQ9BTX7 342 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 APOL6Q9BWW8 343 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 NXF3Q9H4D5 531 aaKnown RBP7.34□□□□□ -1.23
SDCBP-210ENST00000522843 ZFP14Q9HCL3 533 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 UBN1Q9NPG3 1134 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 CRTAC1Q9NQ79 661 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 COL4A3BPQ9Y5P4 624 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 ACACAQ13085 2346 aa7.34□□□□□ -1.23
SDCBP-210ENST00000522843 SF3B1O75533 1304 aaKnown RBP eCLIP7.33□□□□□ -1.24
SDCBP-210ENST00000522843 ABCA7Q8IZY2 2146 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 ATG2BQ96BY7 2078 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 SHISA3A0PJX4 238 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 FAM221BA6H8Z2 402 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 SLC38A8A6NNN8 435 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 DCLK1O15075 740 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 PRC1O43663 620 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 GREM1O60565 184 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 VAMP1P23763 118 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 OR1D2P34982 312 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 EIF4A3P38919 411 aaKnown RBP7.33□□□□□ -1.24
SDCBP-210ENST00000522843 EPHB3P54753 998 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 MLLT6P55198 1093 aaPredicted RBP7.33□□□□□ -1.24
SDCBP-210ENST00000522843 NPEPPSP55786 919 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 LRRC32Q14392 662 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 HSP90AA2PQ14568 343 aaPredicted RBP7.33□□□□□ -1.24
SDCBP-210ENST00000522843 NAB2Q15742 525 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 CLEC16AQ2KHT3 1053 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 SRGAP1Q7Z6B7 1085 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 CHD1LQ86WJ1 897 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 CEP57Q86XR8 500 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 TEX2Q8IWB9 1127 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 CNNM3Q8NE01 707 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 PRPF31Q8WWY3 499 aaKnown RBP7.33□□□□□ -1.24
SDCBP-210ENST00000522843 SLC5A5Q92911 643 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 SMARCD2Q92925 531 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 KREMEN1Q96MU8 473 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 LRRC3BQ96PB8 259 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 CNTD2Q9H8S5 307 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 BARHL2Q9NY43 387 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 SNTG2Q9NY99 539 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 MTRRQ9UBK8 725 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 GIT1Q9Y2X7 761 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 NUP205Q92621 2012 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 KALRNO60229 2985 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 CFAP46Q8IYW2 2715 aa7.33□□□□□ -1.24
SDCBP-210ENST00000522843 CCDC163A0A0D9SF12 145 aa7.32□□□□□ -1.24
SDCBP-210ENST00000522843 SPAARA0A1B0GVQ0 90 aa7.32□□□□□ -1.24
SDCBP-210ENST00000522843 ARHGEF37A1IGU5 675 aa7.32□□□□□ -1.24
SDCBP-210ENST00000522843 BCLAF3A2AJT9 711 aaKnown RBP7.32□□□□□ -1.24
SDCBP-210ENST00000522843 MYBPHLA2RUH7 354 aa7.32□□□□□ -1.24
SDCBP-210ENST00000522843 CASTOR2A6NHX0 329 aa7.32□□□□□ -1.24
SDCBP-210ENST00000522843 HEPACAM2A8MVW5 462 aa7.32□□□□□ -1.24
SDCBP-210ENST00000522843 PATE3B3GLJ2 98 aa7.32□□□□□ -1.24
SDCBP-210ENST00000522843 SPECC1L-ADORA2AF8WAN1 911 aa7.32□□□□□ -1.24
SDCBP-210ENST00000522843 HIP1O00291 1037 aa7.32□□□□□ -1.24
SDCBP-210ENST00000522843 PTGESO14684 152 aa7.32□□□□□ -1.24
SDCBP-210ENST00000522843 ZNF263O14978 683 aa7.32□□□□□ -1.24
SDCBP-210ENST00000522843 NRDCO43847 1150 aa7.32□□□□□ -1.24
SDCBP-210ENST00000522843 PSMD10O75832 226 aa7.32□□□□□ -1.24
SDCBP-210ENST00000522843 SEC24AO95486 1093 aa7.32□□□□□ -1.24
SDCBP-210ENST00000522843 SRGAP2CP0DJJ0 459 aa7.32□□□□□ -1.24
SDCBP-210ENST00000522843 CALM1P0DP23 149 aa7.32□□□□□ -1.24
SDCBP-210ENST00000522843 CALM2P0DP24 149 aa7.32□□□□□ -1.24
SDCBP-210ENST00000522843 CALM3P0DP25 149 aa7.32□□□□□ -1.24
SDCBP-210ENST00000522843 GJA1P17302 382 aa7.32□□□□□ -1.24
SDCBP-210ENST00000522843 VIPR1P32241 457 aa7.32□□□□□ -1.24
SDCBP-210ENST00000522843 DNM2P50570 870 aa7.32□□□□□ -1.24
SDCBP-210ENST00000522843 LAMTOR4Q0VGL1 99 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 219.1 ms