RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 DCDC2CA8MYV0 355 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 RASSF9O75901 435 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 CTSHP09668 335 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 NNMTP40261 264 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 AQP5P55064 265 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 PPP3CAQ08209 521 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 FAM83EQ2M2I3 478 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 MFSD14CQ5VZR4 134 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 KATNAL2Q8IYT4 538 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 RXFP2Q8WXD0 754 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 ALG3Q92685 438 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 TRPC5OSA6NMA1 111 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 ANXA9O76027 345 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 SOX10P56693 466 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 KCNJ2P63252 427 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 RASA2Q15283 850 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 NIPA1Q7RTP0 329 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 SZRD1Q7Z422 152 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 KATNAL1Q9BW62 490 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 GID8Q9NWU2 228 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 HACL1Q9UJ83 578 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 UNC5CO95185 931 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 PAX7P23759 505 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 LAYNQ6UX15 382 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.28□□□□□ -0.12
SYNPO-205ENST00000522122 THRAP10827 490 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 DCAF4L1Q3SXM0 396 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 TTC23LQ6PF05 361 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 LRRC15Q8TF66 581 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 STK32AQ8WU08 396 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 TMEM120AQ9BXJ8 343 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 CYP3A43Q9HB55 503 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 CYP39A1Q9NYL5 469 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 SLC30A1Q9Y6M5 507 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 CICQ96RK0 1608 aaPredicted RBP14.28□□□□□ -0.12
SYNPO-205ENST00000522122 NWD2Q9ULI1 1742 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 C16orf96A6NNT2 1141 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 TIMM44O43615 452 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 MYCP01106 439 aaPredicted RBP14.28□□□□□ -0.12
SYNPO-205ENST00000522122 PYGLP06737 847 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 HSPA1AP0DMV8 641 aaKnown RBP14.28□□□□□ -0.12
SYNPO-205ENST00000522122 HSPA1BP0DMV9 641 aaKnown RBP14.28□□□□□ -0.12
SYNPO-205ENST00000522122 CHKAP35790 457 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 SKIV2L2P42285 1042 aaKnown RBP14.28□□□□□ -0.12
SYNPO-205ENST00000522122 DSG1Q02413 1049 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 SNAPC2Q13487 334 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 ACCSLQ4AC99 568 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 CLEC4FQ8N1N0 589 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 OSBPL7Q9BZF2 842 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 LRRC40Q9H9A6 602 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 SAR1AQ9NR31 198 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 PCDHA2Q9Y5H9 948 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 PECAM1P16284 738 aaPredicted RBP14.28□□□□□ -0.12
SYNPO-205ENST00000522122 BGNP21810 368 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 RANBP1P43487 201 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 CCDC15Q0P6D6 951 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 KRT33BQ14525 404 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 VEPH1Q14D04 833 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 GLRA4Q5JXX5 417 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 TMEM176AQ96HP8 235 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 SIX2Q9NPC8 291 aa14.28□□□□□ -0.12
SYNPO-205ENST00000522122 DNM1LO00429 736 aa14.27□□□□□ -0.12
SYNPO-205ENST00000522122 TNPO2O14787 897 aaKnown RBP14.27□□□□□ -0.12
SYNPO-205ENST00000522122 PMPCBO75439 489 aa14.27□□□□□ -0.12
SYNPO-205ENST00000522122 HNRNPCP07910 306 aaKnown RBP eCLIP14.27□□□□□ -0.12
SYNPO-205ENST00000522122 KRT16P08779 473 aa14.27□□□□□ -0.12
SYNPO-205ENST00000522122 C6orf222P0C671 652 aaPredicted RBP14.27□□□□□ -0.12
SYNPO-205ENST00000522122 GRK2P25098 689 aa14.27□□□□□ -0.12
SYNPO-205ENST00000522122 CNTFP26441 200 aa14.27□□□□□ -0.12
SYNPO-205ENST00000522122 MAP4P27816 1152 aaKnown RBP14.27□□□□□ -0.12
SYNPO-205ENST00000522122 PPATQ06203 517 aa14.27□□□□□ -0.12
SYNPO-205ENST00000522122 SLC15A2Q16348 729 aa14.27□□□□□ -0.12
SYNPO-205ENST00000522122 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.27□□□□□ -0.12
SYNPO-205ENST00000522122 TEKT4Q8WW24 435 aa14.27□□□□□ -0.12
SYNPO-205ENST00000522122 CCT7Q99832 543 aa14.27□□□□□ -0.12
SYNPO-205ENST00000522122 DNAJC16Q9Y2G8 782 aa14.27□□□□□ -0.12
SYNPO-205ENST00000522122 DTNAQ9Y4J8 743 aa14.27□□□□□ -0.12
SYNPO-205ENST00000522122 FSCN2O14926 492 aa14.27□□□□□ -0.13
SYNPO-205ENST00000522122 HMBSP08397 361 aa14.27□□□□□ -0.13
SYNPO-205ENST00000522122 STAG3L1P0CL83 205 aa14.27□□□□□ -0.13
SYNPO-205ENST00000522122 SERPINB3P29508 390 aa14.27□□□□□ -0.13
SYNPO-205ENST00000522122 DGKDQ16760 1214 aa14.27□□□□□ -0.13
SYNPO-205ENST00000522122 APOBEC3HQ6NTF7 200 aaKnown RBP14.27□□□□□ -0.13
SYNPO-205ENST00000522122 DENND1BQ6P3S1 775 aa14.27□□□□□ -0.13
SYNPO-205ENST00000522122 MFSD7Q6UXD7 560 aa14.27□□□□□ -0.13
SYNPO-205ENST00000522122 DACH2Q96NX9 599 aa14.27□□□□□ -0.13
SYNPO-205ENST00000522122 WDR18Q9BV38 432 aa14.27□□□□□ -0.13
SYNPO-205ENST00000522122 WDCPQ9H6R7 721 aa14.27□□□□□ -0.13
SYNPO-205ENST00000522122 ZNF212Q9UDV6 495 aa14.27□□□□□ -0.13
SYNPO-205ENST00000522122 FMO1Q01740 532 aa14.27□□□□□ -0.13
SYNPO-205ENST00000522122 PGM5Q15124 567 aa14.27□□□□□ -0.13
SYNPO-205ENST00000522122 EFCAB1Q9HAE3 211 aa14.27□□□□□ -0.13
SYNPO-205ENST00000522122 COG5Q9UP83 839 aa14.27□□□□□ -0.13
SYNPO-205ENST00000522122 ALADP13716 330 aa14.26□□□□□ -0.13
SYNPO-205ENST00000522122 AMHR2Q16671 573 aa14.26□□□□□ -0.13
SYNPO-205ENST00000522122 AASDHQ4L235 1098 aaPredicted RBP14.26□□□□□ -0.13
SYNPO-205ENST00000522122 SNED1Q8TER0 1413 aa14.26□□□□□ -0.13
SYNPO-205ENST00000522122 WNK4Q96J92 1243 aa14.26□□□□□ -0.13
SYNPO-205ENST00000522122 TMEM237Q96Q45 408 aa14.26□□□□□ -0.13
SYNPO-205ENST00000522122 MYH8P13535 1937 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms