RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 CSHL1Q14406 222 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 DLGAP5Q15398 846 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 CYP2A13Q16696 494 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 GEN1Q17RS7 908 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 FAAH2Q6GMR7 532 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 FAM180BQ6P0A1 224 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 GLB1LQ6UWU2 654 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 CLEC9AQ6UXN8 241 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 C1orf122Q6ZSJ8 110 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 Q6ZSN1 163 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 LIMS2Q7Z4I7 341 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 ABRAQ8N0Z2 381 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 SUN3Q8TAQ9 357 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 HTRA1Q92743 480 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 RNF31Q96EP0 1072 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 FAM89AQ96GI7 184 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 WDR24Q96S15 920 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 GPR20Q99678 358 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 INO80BQ9C086 356 aaPredicted RBP8.42□□□□□ -1.06
LSM1-202ENST00000520286 CNTN6Q9UQ52 1028 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 EIF4G3O43432 1585 aaKnown RBP8.41□□□□□ -1.06
LSM1-202ENST00000520286 EFCAB8A8MWE9 144 aa8.41□□□□□ -1.06
LSM1-202ENST00000520286 AHRRA9YTQ3 701 aa8.41□□□□□ -1.06
LSM1-202ENST00000520286 E7EVH7 732 aa8.41□□□□□ -1.06
LSM1-202ENST00000520286 ACO1P21399 889 aaKnown RBP8.41□□□□□ -1.06
LSM1-202ENST00000520286 HIBADHP31937 336 aaKnown RBP8.41□□□□□ -1.06
LSM1-202ENST00000520286 LIFRP42702 1097 aa8.41□□□□□ -1.06
LSM1-202ENST00000520286 RXRGP48443 463 aa8.41□□□□□ -1.06
LSM1-202ENST00000520286 CRHR2Q13324 411 aa8.41□□□□□ -1.06
LSM1-202ENST00000520286 FSTL5Q8N475 847 aaPredicted RBP8.41□□□□□ -1.06
LSM1-202ENST00000520286 TMEM57Q8N5G2 664 aa8.41□□□□□ -1.06
LSM1-202ENST00000520286 PCYOX1LQ8NBM8 494 aa8.41□□□□□ -1.06
LSM1-202ENST00000520286 CEP70Q8NHQ1 597 aa8.41□□□□□ -1.06
LSM1-202ENST00000520286 OSCP1Q8WVF1 389 aa8.41□□□□□ -1.06
LSM1-202ENST00000520286 CPT1BQ92523 772 aa8.41□□□□□ -1.06
LSM1-202ENST00000520286 FAM136AQ96C01 138 aa8.41□□□□□ -1.06
LSM1-202ENST00000520286 C17orf80Q9BSJ5 609 aa8.41□□□□□ -1.06
LSM1-202ENST00000520286 TTPALQ9BTX7 342 aa8.41□□□□□ -1.06
LSM1-202ENST00000520286 UNKLQ9H9P5 680 aaKnown RBP8.41□□□□□ -1.06
LSM1-202ENST00000520286 G6PC2Q9NQR9 355 aa8.41□□□□□ -1.06
LSM1-202ENST00000520286 RASSF1Q9NS23 344 aa8.41□□□□□ -1.06
LSM1-202ENST00000520286 NDUFAF4Q9P032 175 aa8.41□□□□□ -1.06
LSM1-202ENST00000520286 SLC27A6Q9Y2P4 619 aa8.41□□□□□ -1.06
LSM1-202ENST00000520286 NOX1Q9Y5S8 564 aa8.41□□□□□ -1.06
LSM1-202ENST00000520286 COL15A1P39059 1388 aa8.4□□□□□ -1.06
LSM1-202ENST00000520286 PATE3B3GLJ2 98 aa8.4□□□□□ -1.06
LSM1-202ENST00000520286 RPP40O75818 363 aaKnown RBP8.4□□□□□ -1.06
LSM1-202ENST00000520286 ZSCAN22P10073 491 aaPredicted RBP8.4□□□□□ -1.06
LSM1-202ENST00000520286 MTHFSP49914 203 aa8.4□□□□□ -1.06
LSM1-202ENST00000520286 MAPK7Q13164 816 aa8.4□□□□□ -1.06
LSM1-202ENST00000520286 ANKS1BQ7Z6G8 1248 aa8.4□□□□□ -1.06
LSM1-202ENST00000520286 LRRC56Q8IYG6 542 aaPredicted RBP8.4□□□□□ -1.06
LSM1-202ENST00000520286 IZUMO1Q8IYV9 350 aa8.4□□□□□ -1.06
LSM1-202ENST00000520286 C11orf44Q8N8P7 122 aa8.4□□□□□ -1.06
LSM1-202ENST00000520286 ATG4AQ8WYN0 398 aa8.4□□□□□ -1.06
LSM1-202ENST00000520286 NACC2Q96BF6 587 aa8.4□□□□□ -1.06
LSM1-202ENST00000520286 TOX2Q96NM4 488 aa8.4□□□□□ -1.06
LSM1-202ENST00000520286 TWNKQ96RR1 684 aa8.4□□□□□ -1.06
LSM1-202ENST00000520286 AMBRA1Q9C0C7 1298 aa8.4□□□□□ -1.06
LSM1-202ENST00000520286 CHODLQ9H9P2 273 aa8.4□□□□□ -1.06
LSM1-202ENST00000520286 TMEM160Q9NX00 188 aa8.4□□□□□ -1.06
LSM1-202ENST00000520286 RIMKLBQ9ULI2 386 aa8.4□□□□□ -1.06
LSM1-202ENST00000520286 CLASP1Q7Z460 1538 aa8.39□□□□□ -1.07
LSM1-202ENST00000520286 GAPVD1Q14C86 1478 aa8.39□□□□□ -1.07
LSM1-202ENST00000520286 SOGA1O94964 1423 aa8.39□□□□□ -1.07
LSM1-202ENST00000520286 GRXCR1A8MXD5 290 aa8.39□□□□□ -1.07
LSM1-202ENST00000520286 CER1O95813 267 aa8.39□□□□□ -1.07
LSM1-202ENST00000520286 GATA3P23771 443 aa8.39□□□□□ -1.07
LSM1-202ENST00000520286 SERPINA4P29622 427 aa8.39□□□□□ -1.07
LSM1-202ENST00000520286 HTR7P34969 479 aa8.39□□□□□ -1.07
LSM1-202ENST00000520286 CCR5P51681 352 aa8.39□□□□□ -1.07
LSM1-202ENST00000520286 VAMP2P63027 116 aa8.39□□□□□ -1.07
LSM1-202ENST00000520286 ADAM17P78536 824 aa8.39□□□□□ -1.07
LSM1-202ENST00000520286 CHRNDQ07001 517 aa8.39□□□□□ -1.07
LSM1-202ENST00000520286 LY6KQ17RY6 165 aa8.39□□□□□ -1.07
LSM1-202ENST00000520286 P3H1Q32P28 736 aa8.39□□□□□ -1.07
LSM1-202ENST00000520286 SPDYE7PQ495Y7 208 aa8.39□□□□□ -1.07
LSM1-202ENST00000520286 Q8TCH9 128 aa8.39□□□□□ -1.07
LSM1-202ENST00000520286 HDAC2Q92769 488 aaKnown RBP8.39□□□□□ -1.07
LSM1-202ENST00000520286 BOD1Q96IK1 185 aa8.39□□□□□ -1.07
LSM1-202ENST00000520286 HAPLN3Q96S86 360 aa8.39□□□□□ -1.07
LSM1-202ENST00000520286 VN1R3Q9BXE9 311 aa8.39□□□□□ -1.07
LSM1-202ENST00000520286 TPSD1Q9BZJ3 242 aa8.39□□□□□ -1.07
LSM1-202ENST00000520286 NFU1Q9UMS0 254 aa8.39□□□□□ -1.07
LSM1-202ENST00000520286 MAP3K2Q9Y2U5 619 aa8.39□□□□□ -1.07
LSM1-202ENST00000520286 CCDC88BA6NC98 1476 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 ITIH6Q6UXX5 1313 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 KIF28PB7ZC32 967 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 CBFA2T3O75081 653 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 LDHCP07864 332 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 IFIT1P09914 478 aaKnown RBP8.38□□□□□ -1.07
LSM1-202ENST00000520286 ATP1A3P13637 1013 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 CFPP27918 469 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 TIRAPP58753 221 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 SP2Q02086 613 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 RRP1BQ14684 758 aaKnown RBP8.38□□□□□ -1.07
LSM1-202ENST00000520286 CLCA4Q14CN2 919 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 SMAD1Q15797 465 aaKnown RBP8.38□□□□□ -1.07
LSM1-202ENST00000520286 GALNTL6Q49A17 601 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 UBXN11Q5T124 520 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms