RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 BMT2Q1RMZ1 405 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 KBTBD12Q3ZCT8 623 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 SV2CQ496J9 727 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 ACBD5Q5T8D3 534 aaPredicted RBP12.11□□□□□ -0.47
SYNPO-204ENST00000519664 SLFN11Q7Z7L1 901 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 SLC9A9Q8IVB4 645 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 KIAA0319LQ8IZA0 1049 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 FUKQ8N0W3 1084 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 ZNF513Q8N8E2 541 aaPredicted RBP12.11□□□□□ -0.47
SYNPO-204ENST00000519664 RNF217Q8TC41 542 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 DNAJB3Q8WWF6 145 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 USP6NLQ92738 828 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 SEPT5Q99719 369 aaPredicted RBP12.11□□□□□ -0.47
SYNPO-204ENST00000519664 TMEM120AQ9BXJ8 343 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 FAM96AQ9H5X1 160 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 AVENQ9NQS1 362 aaPredicted RBP12.11□□□□□ -0.47
SYNPO-204ENST00000519664 NDFIP2Q9NV92 336 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 CPA4Q9UI42 421 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 DNAJC16Q9Y2G8 782 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 CASTOR2A6NHX0 329 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 E9PBE3 544 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 KLHL41O60662 606 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 NFICP08651 508 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 SERPINB5P36952 375 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 HADHAP40939 763 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 ADCYAP1R1P41586 468 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 PLIN5Q00G26 463 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 CAPSQ13938 189 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 C12orf29Q8N999 325 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 ULK4Q96C45 1275 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 PRDM5Q9NQX1 630 aaPredicted RBP12.11□□□□□ -0.47
SYNPO-204ENST00000519664 V9GYQ6 96 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 SDR42E2A6NKP2 422 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 ACADSBP45954 432 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 MARSP56192 900 aaKnown RBP12.11□□□□□ -0.47
SYNPO-204ENST00000519664 VGLL4Q14135 290 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 DCAF4L1Q3SXM0 396 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 C16orf46Q6P387 395 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 EGFL6Q8IUX8 553 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 COLGALT1Q8NBJ5 622 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 DNERQ8NFT8 737 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 RFWD2Q8NHY2 731 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 OLFM3Q96PB7 478 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 MRIQ9BWK5 157 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 KDM4CQ9H3R0 1056 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 BARX2Q9UMQ3 279 aaPredicted RBP12.11□□□□□ -0.47
SYNPO-204ENST00000519664 SHOC2Q9UQ13 582 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 MYO9BQ13459 2157 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 AKAP12Q02952 1782 aa12.11□□□□□ -0.47
SYNPO-204ENST00000519664 IGLV3-22A0A075B6J6 115 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 E2F6O75461 281 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 TGFB3P10600 412 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 SERPINB3P29508 390 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 RASA2Q15283 850 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 CNGA2Q16280 664 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 CNGA3Q16281 694 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 MGAT5BQ3V5L5 792 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 FBXO47Q5MNV8 452 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 ZPBP2Q6X784 338 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 PPHLN1Q8NEY8 458 aaKnown RBP12.1□□□□□ -0.47
SYNPO-204ENST00000519664 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.1□□□□□ -0.47
SYNPO-204ENST00000519664 WRAP73Q9P2S5 460 aaPredicted RBP12.1□□□□□ -0.47
SYNPO-204ENST00000519664 NRXN3Q9Y4C0 1643 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 IQCA1LA6NCM1 817 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 TSPAN3O60637 253 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 DNAJC6O75061 913 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 ENDOD1O94919 500 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 CST3P01034 146 aaPredicted RBP12.1□□□□□ -0.47
SYNPO-204ENST00000519664 KCNA3P22001 575 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 PCSK1P29120 753 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 ADIGQ0VDE8 80 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 C6orf10Q5SRN2 563 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 KCNT2Q6UVM3 1135 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 CXorf38Q8TB03 319 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 SLC2A14Q8TDB8 520 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 PPCSQ9HAB8 311 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 SLIT3O75094 1523 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 M0R2N6 131 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 SPTLC1O15269 473 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 CELF2O95319 508 aaKnown RBP12.1□□□□□ -0.47
SYNPO-204ENST00000519664 BTKQ06187 659 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 HSDL1Q3SXM5 330 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 ERMARDQ5T6L9 678 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 ADGRF2Q8IZF7 708 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 RNF148Q8N7C7 305 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 VCPIP1Q96JH7 1222 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 ZNF512Q96ME7 567 aaPredicted RBP12.1□□□□□ -0.47
SYNPO-204ENST00000519664 RXFP1Q9HBX9 757 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 PCYOX1Q9UHG3 505 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 RBAK-RBAKDNI3L0D1 243 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 SNX3O60493 162 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 CYP1A2P05177 515 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 KCNA2P16389 499 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 MLH1P40692 756 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 CLK2P49760 499 aaKnown RBP12.1□□□□□ -0.47
SYNPO-204ENST00000519664 TKTL1P51854 596 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 KCNJ2P63252 427 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 MED21Q13503 144 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 ZNF484Q5JVG2 852 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 ISLR2Q6UXK2 745 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms