RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 CACNA2D4Q7Z3S7 1137 aa14.43□□□□□ -0.1
TCOF1-215ENST00000515516 TADA2BQ86TJ2 420 aa14.43□□□□□ -0.1
TCOF1-215ENST00000515516 GAB3Q8WWW8 586 aa14.43□□□□□ -0.1
TCOF1-215ENST00000515516 HHIPQ96QV1 700 aa14.43□□□□□ -0.1
TCOF1-215ENST00000515516 PNKPQ96T60 521 aa14.43□□□□□ -0.1
TCOF1-215ENST00000515516 PNPLA8Q9NP80 782 aa14.43□□□□□ -0.1
TCOF1-215ENST00000515516 ARMCX3Q9UH62 379 aaPredicted RBP14.43□□□□□ -0.1
TCOF1-215ENST00000515516 OPRD1P41143 372 aa14.42□□□□□ -0.1
TCOF1-215ENST00000515516 EIF2DP41214 584 aaKnown RBP14.42□□□□□ -0.1
TCOF1-215ENST00000515516 MCCD1P59942 119 aaPredicted RBP14.42□□□□□ -0.1
TCOF1-215ENST00000515516 YWHAEP62258 255 aaKnown RBP14.42□□□□□ -0.1
TCOF1-215ENST00000515516 C2orf27AQ580R0 203 aa14.42□□□□□ -0.1
TCOF1-215ENST00000515516 RHBDF2Q6PJF5 856 aa14.42□□□□□ -0.1
TCOF1-215ENST00000515516 TSTD1Q8NFU3 115 aa14.42□□□□□ -0.1
TCOF1-215ENST00000515516 WHAMMQ8TF30 809 aa14.42□□□□□ -0.1
TCOF1-215ENST00000515516 SEMA4DQ92854 862 aa14.42□□□□□ -0.1
TCOF1-215ENST00000515516 ERCC4Q92889 916 aaPredicted RBP14.42□□□□□ -0.1
TCOF1-215ENST00000515516 TMEM176AQ96HP8 235 aa14.42□□□□□ -0.1
TCOF1-215ENST00000515516 DUSP16Q9BY84 665 aa14.42□□□□□ -0.1
TCOF1-215ENST00000515516 FAM124BQ9H5Z6 455 aaPredicted RBP14.42□□□□□ -0.1
TCOF1-215ENST00000515516 METTL14Q9HCE5 456 aaKnown RBP14.42□□□□□ -0.1
TCOF1-215ENST00000515516 CISHQ9NSE2 258 aa14.42□□□□□ -0.1
TCOF1-215ENST00000515516 LSM7Q9UK45 103 aaKnown RBP14.42□□□□□ -0.1
TCOF1-215ENST00000515516 CDV3Q9UKY7 258 aaKnown RBP14.42□□□□□ -0.1
TCOF1-215ENST00000515516 K7EQS6 105 aa14.41□□□□□ -0.1
TCOF1-215ENST00000515516 CYP26A1O43174 497 aa14.41□□□□□ -0.1
TCOF1-215ENST00000515516 FOXD2O60548 495 aaPredicted RBP14.41□□□□□ -0.1
TCOF1-215ENST00000515516 RALAP11233 206 aa14.41□□□□□ -0.1
TCOF1-215ENST00000515516 RARGP13631 454 aa14.41□□□□□ -0.1
TCOF1-215ENST00000515516 GRIA2P42262 883 aa14.41□□□□□ -0.1
TCOF1-215ENST00000515516 SLC6A11P48066 632 aa14.41□□□□□ -0.1
TCOF1-215ENST00000515516 PSEN1P49768 467 aa14.41□□□□□ -0.1
TCOF1-215ENST00000515516 MRPS21P82921 87 aaKnown RBP14.41□□□□□ -0.1
TCOF1-215ENST00000515516 ANO4Q32M45 955 aa14.41□□□□□ -0.1
TCOF1-215ENST00000515516 LY6G5CQ5SRR4 150 aa14.41□□□□□ -0.1
TCOF1-215ENST00000515516 PPP1R26Q5T8A7 1209 aaPredicted RBP14.41□□□□□ -0.1
TCOF1-215ENST00000515516 ELOA2Q8IYF1 753 aaPredicted RBP14.41□□□□□ -0.1
TCOF1-215ENST00000515516 FAM160A2Q8N612 972 aaPredicted RBP14.41□□□□□ -0.1
TCOF1-215ENST00000515516 SPATA20Q8TB22 786 aa14.41□□□□□ -0.1
TCOF1-215ENST00000515516 USP33Q8TEY7 942 aa14.41□□□□□ -0.1
TCOF1-215ENST00000515516 EZH1Q92800 747 aaPredicted RBP14.41□□□□□ -0.1
TCOF1-215ENST00000515516 DHTKD1Q96HY7 919 aaPredicted RBP14.41□□□□□ -0.1
TCOF1-215ENST00000515516 LOXL4Q96JB6 756 aa14.41□□□□□ -0.1
TCOF1-215ENST00000515516 ZFRQ96KR1 1074 aaKnown RBP14.41□□□□□ -0.1
TCOF1-215ENST00000515516 CDK5RAP1Q96SZ6 601 aaKnown RBP14.41□□□□□ -0.1
TCOF1-215ENST00000515516 ARHGEF4Q9NR80 690 aa14.41□□□□□ -0.1
TCOF1-215ENST00000515516 POLR3BQ9NW08 1133 aaPredicted RBP14.41□□□□□ -0.1
TCOF1-215ENST00000515516 NAGPAQ9UK23 515 aa14.41□□□□□ -0.1
TCOF1-215ENST00000515516 A0A1W2PQH9 124 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 TBC1D3BA6NDS4 549 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 HHLA1C9JL84 531 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 ALDH1A2O94788 518 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 KAT7O95251 611 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 TBX18O95935 607 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 HOXC13P31276 330 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 TNFRSF4P43489 277 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 PLA2G4AP47712 749 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 DGKEP52429 567 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 KIF11P52732 1056 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 CETN1Q12798 172 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 CSRP2Q16527 193 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 CCDC40Q4G0X9 1142 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 HSF5Q4G112 596 aaPredicted RBP14.4□□□□□ -0.1
TCOF1-215ENST00000515516 C10orf120Q5SQS8 335 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 ISM2Q6H9L7 571 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 GPRIN1Q7Z2K8 1008 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 TTC30AQ86WT1 665 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 BBS7Q8IWZ6 715 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 ARHGAP18Q8N392 663 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 TATDN2Q93075 761 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 CEP63Q96MT8 703 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 DUSP9Q99956 384 aaKnown RBP14.4□□□□□ -0.1
TCOF1-215ENST00000515516 KLF16Q9BXK1 252 aaPredicted RBP14.4□□□□□ -0.1
TCOF1-215ENST00000515516 PARD6AQ9NPB6 346 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 CYLDQ9NQC7 956 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 SPHK2Q9NRA0 654 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 SEMA4GQ9NTN9 838 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 DLL3Q9NYJ7 618 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 DEC1Q9P2X7 70 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 EBF1Q9UH73 591 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 DNMT3LQ9UJW3 386 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 EP300Q09472 2414 aaPredicted RBP14.4□□□□□ -0.1
TCOF1-215ENST00000515516 GVINP1Q7Z2Y8 2422 aa14.4□□□□□ -0.1
TCOF1-215ENST00000515516 TRIM49BA6NDI0 452 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 HOXC11O43248 304 aaPredicted RBP14.39□□□□□ -0.11
TCOF1-215ENST00000515516 RHOBTB1O94844 696 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 TBXAS1P24557 533 aaPredicted RBP14.39□□□□□ -0.11
TCOF1-215ENST00000515516 TIE1P35590 1138 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 PGFP49763 221 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 PMS1P54277 932 aaKnown RBP14.39□□□□□ -0.11
TCOF1-215ENST00000515516 RAD23BP54727 409 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 KDSRQ06136 332 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 CUL2Q13617 745 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 ELF2Q15723 593 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 GAB4Q2WGN9 574 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 CBWD6Q4V339 395 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 USP39Q53GS9 565 aaKnown RBP14.39□□□□□ -0.11
TCOF1-215ENST00000515516 CBWD3Q5JTY5 395 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 EOGTQ5NDL2 527 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 CBWD5Q5RIA9 395 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms