RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 PRKG1Q13976 671 aa10.03□□□□□ -0.8
VCAN-210ENST00000513960 EFHC1Q5JVL4 640 aa10.03□□□□□ -0.8
VCAN-210ENST00000513960 ANGEL2Q5VTE6 544 aaKnown RBP10.03□□□□□ -0.8
VCAN-210ENST00000513960 ATG16L1Q676U5 607 aa10.03□□□□□ -0.8
VCAN-210ENST00000513960 DENND5BQ6ZUT9 1274 aa10.03□□□□□ -0.8
VCAN-210ENST00000513960 DEFB132Q7Z7B7 95 aa10.03□□□□□ -0.8
VCAN-210ENST00000513960 TREML1Q86YW5 311 aa10.03□□□□□ -0.8
VCAN-210ENST00000513960 REPS2Q8NFH8 660 aa10.03□□□□□ -0.8
VCAN-210ENST00000513960 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.03□□□□□ -0.8
VCAN-210ENST00000513960 HSPH1Q92598 858 aa10.03□□□□□ -0.8
VCAN-210ENST00000513960 ZBTB45Q96K62 511 aaPredicted RBP10.03□□□□□ -0.8
VCAN-210ENST00000513960 KLHL4Q9C0H6 718 aa10.03□□□□□ -0.8
VCAN-210ENST00000513960 RPL26L1Q9UNX3 145 aaKnown RBP10.03□□□□□ -0.8
VCAN-210ENST00000513960 AK5Q9Y6K8 562 aa10.03□□□□□ -0.8
VCAN-210ENST00000513960 IVNS1ABPQ9Y6Y0 642 aa10.03□□□□□ -0.8
VCAN-210ENST00000513960 MYOCOSA0A1B0GUC4 107 aa10.02□□□□□ -0.8
VCAN-210ENST00000513960 CYB561D2O14569 222 aa10.02□□□□□ -0.8
VCAN-210ENST00000513960 MAGEB2O15479 319 aa10.02□□□□□ -0.8
VCAN-210ENST00000513960 LIASO43766 372 aa10.02□□□□□ -0.8
VCAN-210ENST00000513960 TCEA3O75764 348 aa10.02□□□□□ -0.8
VCAN-210ENST00000513960 CLPTM1O96005 669 aa10.02□□□□□ -0.8
VCAN-210ENST00000513960 C4BPAP04003 597 aaKnown RBP10.02□□□□□ -0.8
VCAN-210ENST00000513960 ABHD2P08910 425 aa10.02□□□□□ -0.8
VCAN-210ENST00000513960 RAG1P15918 1043 aa10.02□□□□□ -0.8
VCAN-210ENST00000513960 TBXAS1P24557 533 aaPredicted RBP10.02□□□□□ -0.8
VCAN-210ENST00000513960 BST1Q10588 318 aa10.02□□□□□ -0.8
VCAN-210ENST00000513960 PDK3Q15120 406 aa10.02□□□□□ -0.8
VCAN-210ENST00000513960 CNGA3Q16281 694 aa10.02□□□□□ -0.8
VCAN-210ENST00000513960 TRIM56Q9BRZ2 755 aaKnown RBP10.02□□□□□ -0.8
VCAN-210ENST00000513960 NRBP2Q9NSY0 501 aa10.02□□□□□ -0.8
VCAN-210ENST00000513960 MYPNQ86TC9 1320 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 XPO1O14980 1071 aaKnown RBP10.02□□□□□ -0.81
VCAN-210ENST00000513960 CST8O60676 142 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 RARBP10826 455 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 GCAP28676 217 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 RPL7AP62424 266 aaKnown RBP10.02□□□□□ -0.81
VCAN-210ENST00000513960 DLG1Q12959 904 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 MORF4L2Q15014 288 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 KBTBD12Q3ZCT8 623 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 MROH9Q5TGP6 573 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 DARS2Q6PI48 645 aaKnown RBP10.02□□□□□ -0.81
VCAN-210ENST00000513960 SCARA5Q6ZMJ2 495 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 CATSPERGQ6ZRH7 1159 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 C15orf39Q6ZRI6 1047 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 APOBEC3FQ8IUX4 373 aaKnown RBP10.02□□□□□ -0.81
VCAN-210ENST00000513960 LENG1Q96BZ8 264 aaPredicted RBP10.02□□□□□ -0.81
VCAN-210ENST00000513960 PTCD3Q96EY7 689 aaKnown RBP10.02□□□□□ -0.81
VCAN-210ENST00000513960 C12orf42Q96LP6 360 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 PHACTR1Q9C0D0 580 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 PORCNQ9H237 461 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 KANSL3Q9P2N6 904 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 FBXO40Q9UH90 709 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 SCINQ9Y6U3 715 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 PROCP04070 461 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 ELK3P41970 407 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 SH3BGRP55822 239 aaPredicted RBP10.02□□□□□ -0.81
VCAN-210ENST00000513960 OTUD4Q01804 1114 aaKnown RBP10.02□□□□□ -0.81
VCAN-210ENST00000513960 RALGPS1Q5JS13 557 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 FNBP1LQ5T0N5 605 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 PPP1R2P3Q6NXS1 205 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 FAF2Q96CS3 445 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 LRGUKQ96M69 825 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 SRPK1Q96SB4 655 aaKnown RBP10.02□□□□□ -0.81
VCAN-210ENST00000513960 APOBEC2Q9Y235 224 aaKnown RBP10.02□□□□□ -0.81
VCAN-210ENST00000513960 DTNAQ9Y4J8 743 aa10.02□□□□□ -0.81
VCAN-210ENST00000513960 CAPN8A6NHC0 703 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 F8VP50 259 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 NFKBIEO00221 500 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 TM9SF1O15321 606 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 TYROBPO43914 113 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 ZBTB7AO95365 584 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 CFHP08603 1231 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 TMEM132AQ24JP5 1023 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 SFT2D3Q587I9 215 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 CYP4A22Q5TCH4 519 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 DHDDSQ86SQ9 333 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 ABRAQ8N0Z2 381 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 RNF148Q8N7C7 305 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 ACTL9Q8TC94 416 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 LRRN4Q8WUT4 740 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 PRPF18Q99633 342 aaKnown RBP10.01□□□□□ -0.81
VCAN-210ENST00000513960 SUDS3Q9H7L9 328 aaPredicted RBP10.01□□□□□ -0.81
VCAN-210ENST00000513960 ZNF112Q9UJU3 913 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 TDRKHQ9Y2W6 561 aaKnown RBP10.01□□□□□ -0.81
VCAN-210ENST00000513960 DCAF8L1A6NGE4 600 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 KBTBD13C9JR72 458 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 E5RJQ4 531 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 NOP56O00567 594 aaKnown RBP10.01□□□□□ -0.81
VCAN-210ENST00000513960 KRT37O76014 449 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 STAMBPO95630 424 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 ITGA2BP08514 1039 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 NELFEP18615 380 aaKnown RBP10.01□□□□□ -0.81
VCAN-210ENST00000513960 MSX2P35548 267 aaPredicted RBP10.01□□□□□ -0.81
VCAN-210ENST00000513960 ADARP55265 1226 aaKnown RBP10.01□□□□□ -0.81
VCAN-210ENST00000513960 MYBPC3Q14896 1274 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 HSP90AA5PQ58FG0 334 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 LGSNQ5TDP6 509 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 NET1Q7Z628 596 aaPredicted RBP10.01□□□□□ -0.81
VCAN-210ENST00000513960 SESTD1Q86VW0 696 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 WDR75Q8IWA0 830 aaKnown RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms