RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 TMEM125Q96AQ2 219 aa4.55□□□□□ -1.68
NUP54-212ENST00000513248 PTCD3Q96EY7 689 aaKnown RBP4.55□□□□□ -1.68
NUP54-212ENST00000513248 OSBPL9Q96SU4 736 aa4.55□□□□□ -1.68
NUP54-212ENST00000513248 SMOQ99835 787 aa4.55□□□□□ -1.68
NUP54-212ENST00000513248 NAA15Q9BXJ9 866 aaKnown RBP4.55□□□□□ -1.68
NUP54-212ENST00000513248 TMOD3Q9NYL9 352 aa4.55□□□□□ -1.68
NUP54-212ENST00000513248 XPR1Q9UBH6 696 aa4.55□□□□□ -1.68
NUP54-212ENST00000513248 CPNE7Q9UBL6 633 aa4.55□□□□□ -1.68
NUP54-212ENST00000513248 ZNHIT2Q9UHR6 403 aa4.55□□□□□ -1.68
NUP54-212ENST00000513248 LTN1O94822 1766 aa4.55□□□□□ -1.68
NUP54-212ENST00000513248 NSD2O96028 1365 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 WDR27A2RRH5 827 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 M0QYG6 137 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 MASP2O00187 686 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 SOAT2O75908 522 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 GRPP07492 148 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 HSP90AB1P08238 724 aaKnown RBP4.54□□□□□ -1.68
NUP54-212ENST00000513248 SLC7A1P30825 629 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 MPLP40238 635 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 TM4SF4P48230 202 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 MTHFSP49914 203 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 ZNF134P52741 427 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 UCP3P55916 312 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 SAFBQ15424 915 aaKnown RBP eCLIP4.54□□□□□ -1.68
NUP54-212ENST00000513248 MAP9Q49MG5 647 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 AMOTQ4VCS5 1084 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 ZNF530Q6P9A1 599 aaPredicted RBP4.54□□□□□ -1.68
NUP54-212ENST00000513248 RNF152Q8N8N0 203 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 FAM46DQ8NEK8 389 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 OR6B3Q8NGW1 331 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 SSH3Q8TE77 659 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 CFAP53Q96M91 514 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 BBC3Q96PG8 261 aaPredicted RBP4.54□□□□□ -1.68
NUP54-212ENST00000513248 AIFM2Q9BRQ8 373 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 ZNF518BQ9C0D4 1074 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 LRRC27Q9C0I9 530 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 NUP62CLQ9H1M0 184 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 CNNM1Q9NRU3 951 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 KCTD5Q9NXV2 234 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 DMTF1Q9Y222 760 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 MEGF6O75095 1541 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 RGPD5Q99666 1765 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 TNS1Q9HBL0 1735 aaKnown RBP4.54□□□□□ -1.68
NUP54-212ENST00000513248 BCL9O00512 1426 aa4.54□□□□□ -1.68
NUP54-212ENST00000513248 KIF20BQ96Q89 1820 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 CEP350Q5VT06 3117 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 F8W8V4 182 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 HMOX1P09601 288 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 IL1R1P14778 569 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 CD38P28907 300 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 PLA2G5P39877 138 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 PIK3CBP42338 1070 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 GCLCP48506 637 aaPredicted RBP4.53□□□□□ -1.68
NUP54-212ENST00000513248 CASP5P51878 434 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 KRTAP10-11P60412 298 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 CD300EQ496F6 205 aaPredicted RBP4.53□□□□□ -1.68
NUP54-212ENST00000513248 LONRF3Q496Y0 759 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 PREPLQ4J6C6 727 aaPredicted RBP4.53□□□□□ -1.68
NUP54-212ENST00000513248 COBLL1Q53SF7 1204 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 COLEC12Q5KU26 742 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 ZKSCAN2Q63HK3 967 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 SULT6B1Q6IMI4 303 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 VWA1Q6PCB0 445 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 OLFML1Q6UWY5 402 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 ZNF783Q6ZMS7 281 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 ADGRG3Q86Y34 549 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 DNAJC5GQ8N7S2 189 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 OR56A3Q8NH54 315 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 SLC9A6Q92581 669 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 AMBRA1Q9C0C7 1298 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 SYNPO2LQ9H987 977 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 XPNPEP3Q9NQH7 507 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 CHST12Q9NRB3 414 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 ADARB2Q9NS39 739 aaKnown RBP4.53□□□□□ -1.68
NUP54-212ENST00000513248 INTS13Q9NVM9 706 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 PAXBP1Q9Y5B6 917 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 PCDHGB6Q9Y5F9 930 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 USP54Q70EL1 1684 aa4.53□□□□□ -1.68
NUP54-212ENST00000513248 FAM208AQ9UK61 1670 aaKnown RBP4.53□□□□□ -1.68
NUP54-212ENST00000513248 PALLDQ8WX93 1383 aa4.53□□□□□ -1.69
NUP54-212ENST00000513248 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.52□□□□□ -1.69
NUP54-212ENST00000513248 MBD3L4A6NDZ8 208 aaPredicted RBP4.52□□□□□ -1.69
NUP54-212ENST00000513248 MBD3L3A6NE82 208 aaPredicted RBP4.52□□□□□ -1.69
NUP54-212ENST00000513248 INO80B-WBP1J3KQ70 363 aa4.52□□□□□ -1.69
NUP54-212ENST00000513248 TOR1BO14657 336 aa4.52□□□□□ -1.69
NUP54-212ENST00000513248 PMM2O15305 246 aa4.52□□□□□ -1.69
NUP54-212ENST00000513248 CYP2C9P11712 490 aa4.52□□□□□ -1.69
NUP54-212ENST00000513248 CXCR5P32302 372 aa4.52□□□□□ -1.69
NUP54-212ENST00000513248 KCNJ5P48544 419 aa4.52□□□□□ -1.69
NUP54-212ENST00000513248 ALDH5A1P51649 535 aaPredicted RBP4.52□□□□□ -1.69
NUP54-212ENST00000513248 FPGSQ05932 587 aa4.52□□□□□ -1.69
NUP54-212ENST00000513248 ZNF543Q08ER8 600 aa4.52□□□□□ -1.69
NUP54-212ENST00000513248 SLC13A2Q13183 592 aa4.52□□□□□ -1.69
NUP54-212ENST00000513248 SF3B3Q15393 1217 aaKnown RBP4.52□□□□□ -1.69
NUP54-212ENST00000513248 GPR162Q16538 588 aa4.52□□□□□ -1.69
NUP54-212ENST00000513248 ERCC6LQ2NKX8 1250 aa4.52□□□□□ -1.69
NUP54-212ENST00000513248 ZIK1Q3SY52 487 aaPredicted RBP4.52□□□□□ -1.69
NUP54-212ENST00000513248 STRIP1Q5VSL9 837 aa4.52□□□□□ -1.69
NUP54-212ENST00000513248 SLC30A10Q6XR72 485 aa4.52□□□□□ -1.69
NUP54-212ENST00000513248 ZC3H10Q96K80 434 aaKnown RBP4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms