RNA–Protein interactions for RNA: ENST00000504181.1

LSM6-204, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 549 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-204ENST00000504181 ECM1Q16610 540 aa13.41□□□□□ -0.26
LSM6-204ENST00000504181 ANO4Q32M45 955 aa13.41□□□□□ -0.26
LSM6-204ENST00000504181 GATAD2AQ86YP4 633 aa13.41□□□□□ -0.26
LSM6-204ENST00000504181 KIAA1958Q8N8K9 716 aa13.41□□□□□ -0.26
LSM6-204ENST00000504181 ERMNQ8TAM6 284 aa13.41□□□□□ -0.26
LSM6-204ENST00000504181 ABCB6Q9NP58 842 aa13.41□□□□□ -0.26
LSM6-204ENST00000504181 ITM2CQ9NQX7 267 aa13.41□□□□□ -0.26
LSM6-204ENST00000504181 TRPM5Q9NZQ8 1165 aa13.41□□□□□ -0.26
LSM6-204ENST00000504181 ABCA12Q86UK0 2595 aa13.41□□□□□ -0.26
LSM6-204ENST00000504181 TLN1Q9Y490 2541 aaKnown RBP13.4□□□□□ -0.26
LSM6-204ENST00000504181 TDRD6O60522 2096 aaKnown RBP13.4□□□□□ -0.26
LSM6-204ENST00000504181 KLK10O43240 276 aa13.4□□□□□ -0.26
LSM6-204ENST00000504181 ABL1P00519 1130 aa13.4□□□□□ -0.26
LSM6-204ENST00000504181 C1SP09871 688 aa13.4□□□□□ -0.26
LSM6-204ENST00000504181 PFKLP17858 780 aa13.4□□□□□ -0.26
LSM6-204ENST00000504181 XBP1P17861 261 aa13.4□□□□□ -0.26
LSM6-204ENST00000504181 ACAT1P24752 427 aaKnown RBP13.4□□□□□ -0.26
LSM6-204ENST00000504181 TPMTP51580 245 aa13.4□□□□□ -0.26
LSM6-204ENST00000504181 EVCP57679 992 aa13.4□□□□□ -0.26
LSM6-204ENST00000504181 TEAD4Q15561 434 aa13.4□□□□□ -0.26
LSM6-204ENST00000504181 C4orf17Q53FE4 359 aa13.4□□□□□ -0.26
LSM6-204ENST00000504181 KCNT1Q5JUK3 1230 aa13.4□□□□□ -0.26
LSM6-204ENST00000504181 GRAMD4Q6IC98 578 aa13.4□□□□□ -0.26
LSM6-204ENST00000504181 CPLX2Q6PUV4 134 aaKnown RBP13.4□□□□□ -0.26
LSM6-204ENST00000504181 ZPBP2Q6X784 338 aa13.4□□□□□ -0.26
LSM6-204ENST00000504181 METTL3Q86U44 580 aaKnown RBP13.4□□□□□ -0.26
LSM6-204ENST00000504181 CACUL1Q86Y37 369 aa13.4□□□□□ -0.26
LSM6-204ENST00000504181 DHX40Q8IX18 779 aaKnown RBP13.4□□□□□ -0.26
LSM6-204ENST00000504181 KRI1Q8N9T8 703 aaKnown RBP13.4□□□□□ -0.26
LSM6-204ENST00000504181 KCNE4Q8WWG9 221 aa13.4□□□□□ -0.26
LSM6-204ENST00000504181 LARP6Q9BRS8 491 aaKnown RBP13.4□□□□□ -0.26
LSM6-204ENST00000504181 TBC1D14Q9P2M4 693 aa13.4□□□□□ -0.26
LSM6-204ENST00000504181 GTF3C4Q9UKN8 822 aa13.4□□□□□ -0.26
LSM6-204ENST00000504181 CACNA1DQ01668 2161 aa13.39□□□□□ -0.27
LSM6-204ENST00000504181 ITPR2Q14571 2701 aa13.39□□□□□ -0.27
LSM6-204ENST00000504181 ENO4A6NNW6 628 aa13.39□□□□□ -0.27
LSM6-204ENST00000504181 SFI1A8K8P3 1242 aa13.39□□□□□ -0.27
LSM6-204ENST00000504181 PRRT4C9JH25 899 aa13.39□□□□□ -0.27
LSM6-204ENST00000504181 HOXC11O43248 304 aaPredicted RBP13.39□□□□□ -0.27
LSM6-204ENST00000504181 MBL2P11226 248 aaPredicted RBP13.39□□□□□ -0.27
LSM6-204ENST00000504181 CD44P16070 742 aaKnown RBP13.39□□□□□ -0.27
LSM6-204ENST00000504181 KRT2P35908 639 aa13.39□□□□□ -0.27
LSM6-204ENST00000504181 USP46P62068 366 aa13.39□□□□□ -0.27
LSM6-204ENST00000504181 MAPK7Q13164 816 aa13.39□□□□□ -0.27
LSM6-204ENST00000504181 UBAP2LQ14157 1087 aaKnown RBP13.39□□□□□ -0.27
LSM6-204ENST00000504181 TMEM132DQ14C87 1099 aa13.39□□□□□ -0.27
LSM6-204ENST00000504181 FUT11Q495W5 492 aa13.39□□□□□ -0.27
LSM6-204ENST00000504181 INTS6LQ5JSJ4 861 aaKnown RBP13.39□□□□□ -0.27
LSM6-204ENST00000504181 ATG14Q6ZNE5 492 aa13.39□□□□□ -0.27
LSM6-204ENST00000504181 FAM124AQ86V42 546 aa13.39□□□□□ -0.27
LSM6-204ENST00000504181 SPATA2LQ8IUW3 424 aaPredicted RBP13.39□□□□□ -0.27
LSM6-204ENST00000504181 SCFD1Q8WVM8 642 aa13.39□□□□□ -0.27
LSM6-204ENST00000504181 TNFRSF25Q93038 417 aa13.39□□□□□ -0.27
LSM6-204ENST00000504181 BICD1Q96G01 975 aa13.39□□□□□ -0.27
LSM6-204ENST00000504181 HIC2Q96JB3 615 aa13.39□□□□□ -0.27
LSM6-204ENST00000504181 TSPAN18Q96SJ8 248 aa13.39□□□□□ -0.27
LSM6-204ENST00000504181 MKRN2Q9H000 416 aaKnown RBP13.39□□□□□ -0.27
LSM6-204ENST00000504181 TM9SF3Q9HD45 589 aa13.39□□□□□ -0.27
LSM6-204ENST00000504181 DNAJC17Q9NVM6 304 aaKnown RBP13.39□□□□□ -0.27
LSM6-204ENST00000504181 SRPK3Q9UPE1 567 aa13.39□□□□□ -0.27
LSM6-204ENST00000504181 SNX14Q9Y5W7 946 aa13.39□□□□□ -0.27
LSM6-204ENST00000504181 KIF26BQ2KJY2 2108 aa13.39□□□□□ -0.27
LSM6-204ENST00000504181 KPNA7A9QM74 516 aa13.38□□□□□ -0.27
LSM6-204ENST00000504181 PAPSS1O43252 624 aaPredicted RBP13.38□□□□□ -0.27
LSM6-204ENST00000504181 FAM189A1O60320 539 aa13.38□□□□□ -0.27
LSM6-204ENST00000504181 OLFM2O95897 454 aa13.38□□□□□ -0.27
LSM6-204ENST00000504181 ADRB2P07550 413 aa13.38□□□□□ -0.27
LSM6-204ENST00000504181 OXTRP30559 389 aa13.38□□□□□ -0.27
LSM6-204ENST00000504181 CCT6AP40227 531 aaKnown RBP13.38□□□□□ -0.27
LSM6-204ENST00000504181 GRIA4P48058 902 aa13.38□□□□□ -0.27
LSM6-204ENST00000504181 TOB2Q14106 344 aaPredicted RBP13.38□□□□□ -0.27
LSM6-204ENST00000504181 KDM7AQ6ZMT4 941 aa13.38□□□□□ -0.27
LSM6-204ENST00000504181 DDX42Q86XP3 938 aaKnown RBP eCLIP13.38□□□□□ -0.27
LSM6-204ENST00000504181 TMEM25Q86YD3 366 aa13.38□□□□□ -0.27
LSM6-204ENST00000504181 SNRNP27Q8WVK2 155 aaKnown RBP13.38□□□□□ -0.27
LSM6-204ENST00000504181 PKMYT1Q99640 499 aa13.38□□□□□ -0.27
LSM6-204ENST00000504181 CCSER1Q9C0I3 900 aa13.38□□□□□ -0.27
LSM6-204ENST00000504181 SPHK2Q9NRA0 654 aa13.38□□□□□ -0.27
LSM6-204ENST00000504181 DDX43Q9NXZ2 648 aaKnown RBP13.38□□□□□ -0.27
LSM6-204ENST00000504181 CLCA2Q9UQC9 943 aa13.38□□□□□ -0.27
LSM6-204ENST00000504181 ZNF840PA6NDX5 716 aa13.37□□□□□ -0.27
LSM6-204ENST00000504181 LAD1O00515 517 aa13.37□□□□□ -0.27
LSM6-204ENST00000504181 HCRTO43612 131 aa13.37□□□□□ -0.27
LSM6-204ENST00000504181 MAPTP10636 758 aaKnown RBP13.37□□□□□ -0.27
LSM6-204ENST00000504181 MCM7P33993 719 aa13.37□□□□□ -0.27
LSM6-204ENST00000504181 CTSKP43235 329 aa13.37□□□□□ -0.27
LSM6-204ENST00000504181 STARD3Q14849 445 aa13.37□□□□□ -0.27
LSM6-204ENST00000504181 SV2CQ496J9 727 aa13.37□□□□□ -0.27
LSM6-204ENST00000504181 CFAP221Q4G0U5 840 aa13.37□□□□□ -0.27
LSM6-204ENST00000504181 PRAMEF14Q5SWL7 426 aa13.37□□□□□ -0.27
LSM6-204ENST00000504181 ADAT2Q7Z6V5 191 aaKnown RBP13.37□□□□□ -0.27
LSM6-204ENST00000504181 BBS7Q8IWZ6 715 aa13.37□□□□□ -0.27
LSM6-204ENST00000504181 PDCL2Q8N4E4 241 aa13.37□□□□□ -0.27
LSM6-204ENST00000504181 EID2Q8N6I1 236 aa13.37□□□□□ -0.27
LSM6-204ENST00000504181 EXD3Q8N9H8 876 aa13.37□□□□□ -0.27
LSM6-204ENST00000504181 TMEM161BQ8NDZ6 487 aa13.37□□□□□ -0.27
LSM6-204ENST00000504181 OTUB2Q96DC9 234 aa13.37□□□□□ -0.27
LSM6-204ENST00000504181 SIPA1Q96FS4 1042 aa13.37□□□□□ -0.27
LSM6-204ENST00000504181 ZNF578Q96N58 590 aaPredicted RBP13.37□□□□□ -0.27
LSM6-204ENST00000504181 ACBD6Q9BR61 282 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms