RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 MMEP08473 750 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 CFHP08603 1231 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 PTPN2P17706 415 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 CDC25BP30305 580 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 PLA2G4AP47712 749 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 SLC5A3P53794 718 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 CDR2Q01850 454 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 KLHL30Q0D2K2 578 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 TBX2Q13207 712 aaPredicted RBP10.57□□□□□ -0.72
NUP54-203ENST00000504173 MEA1Q16626 185 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 TSR1Q2NL82 804 aaKnown RBP10.57□□□□□ -0.72
NUP54-203ENST00000504173 ZNF528Q3MIS6 628 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 TDRD12Q587J7 1177 aaKnown RBP10.57□□□□□ -0.72
NUP54-203ENST00000504173 ATAT1Q5SQI0 421 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 E4F1Q66K89 784 aaPredicted RBP10.57□□□□□ -0.72
NUP54-203ENST00000504173 GRASPQ7Z6J2 395 aaPredicted RBP10.57□□□□□ -0.72
NUP54-203ENST00000504173 PIGZQ86VD9 579 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 CNGA4Q8IV77 575 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 C1orf210Q8IVY1 113 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 SIX5Q8N196 739 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 NUP93Q8N1F7 819 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 TDRD5Q8NAT2 981 aaKnown RBP10.57□□□□□ -0.72
NUP54-203ENST00000504173 FEZF2Q8TBJ5 459 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 NETO1Q8TDF5 533 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 DDX1Q92499 740 aaKnown RBP10.57□□□□□ -0.72
NUP54-203ENST00000504173 SYN2Q92777 582 aaPredicted RBP10.57□□□□□ -0.72
NUP54-203ENST00000504173 PNPLA8Q9NP80 782 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 SEPT11Q9NVA2 429 aaKnown RBP10.57□□□□□ -0.72
NUP54-203ENST00000504173 HCFC1R1Q9NWW0 138 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 EHD2Q9NZN4 543 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 DLGAP2Q9P1A6 1054 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 DNMT3BQ9UBC3 853 aaKnown RBP10.57□□□□□ -0.72
NUP54-203ENST00000504173 UXTQ9UBK9 157 aaPredicted RBP10.57□□□□□ -0.72
NUP54-203ENST00000504173 LIMD1Q9UGP4 676 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 CDH22Q9UJ99 828 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 ZMIZ1Q9ULJ6 1067 aa10.57□□□□□ -0.72
NUP54-203ENST00000504173 GOLGA6L6A8MZA4 724 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 HHLA1C9JL84 531 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 TULP2O00295 520 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 MFAP3LO75121 409 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 RTN3O95197 1032 aaPredicted RBP10.56□□□□□ -0.72
NUP54-203ENST00000504173 PAPLNO95428 1278 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 RHOP08100 348 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 SKILP12757 684 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 MYL4P12829 197 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 CHRNB2P17787 502 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 PRKCIP41743 596 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 MTHFRP42898 656 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 GPD2P43304 727 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 RGS7P49802 495 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 ADKP55263 362 aaKnown RBP10.56□□□□□ -0.72
NUP54-203ENST00000504173 USP46P62068 366 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 FMO1Q01740 532 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 GOLGA8FQ08AF8 430 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 GOLGA8DPQ0D2H9 430 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 TDGQ13569 410 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 GSE1Q14687 1217 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 PABPC1LQ4VXU2 614 aaKnown RBP10.56□□□□□ -0.72
NUP54-203ENST00000504173 CYP4A22Q5TCH4 519 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 TRIM72Q6ZMU5 477 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 PDZD4Q76G19 769 aaPredicted RBP10.56□□□□□ -0.72
NUP54-203ENST00000504173 GPRIN1Q7Z2K8 1008 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 IRF2BP2Q7Z5L9 587 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.56□□□□□ -0.72
NUP54-203ENST00000504173 HS6ST3Q8IZP7 471 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 KDF1Q8NAX2 398 aaPredicted RBP10.56□□□□□ -0.72
NUP54-203ENST00000504173 SPC24Q8NBT2 197 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 LEMD2Q8NC56 503 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 TMEM35BQ8NCS4 154 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 C1orf131Q8NDD1 294 aaKnown RBP10.56□□□□□ -0.72
NUP54-203ENST00000504173 OR8K1Q8NGG5 319 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 SCAMP5Q8TAC9 235 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 SLC35F5Q8WV83 523 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 NOX5Q96PH1 765 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 GCNAQ96QF7 691 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 AGPAT1Q99943 283 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 UBXN6Q9BZV1 441 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 LHX5Q9H2C1 402 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 FBXO44Q9H4M3 255 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 HAUS4Q9H6D7 363 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 LRRC4Q9HBW1 653 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 ZNF334Q9HCZ1 680 aaPredicted RBP10.56□□□□□ -0.72
NUP54-203ENST00000504173 ZNHIT6Q9NWK9 470 aaKnown RBP10.56□□□□□ -0.72
NUP54-203ENST00000504173 CLUHO75153 1309 aa10.56□□□□□ -0.72
NUP54-203ENST00000504173 PIK3R2O00459 728 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 TNFRSF10BO14763 440 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 FGF19O95750 216 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 LSM8O95777 96 aaKnown RBP10.55□□□□□ -0.72
NUP54-203ENST00000504173 SERPING1P05155 500 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 HMGA1P17096 107 aaKnown RBP10.55□□□□□ -0.72
NUP54-203ENST00000504173 TNFAIP3P21580 790 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 FSHRP23945 695 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 YWHAQP27348 245 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 GABRR2P28476 465 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 TKTL1P51854 596 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 KIF11P52732 1056 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 EPHA5P54756 1037 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 NTHL1P78549 312 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 ADIGQ0VDE8 80 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 PDCLQ13371 301 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms