RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 SMIM10L2AP0DMW4 78 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 SMIM10L2BP0DMW5 78 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 CYP2C9P11712 490 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 CYP3A5P20815 502 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 GCAP28676 217 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 ATP5OP48047 213 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 GDF10P55107 478 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 BCAR1P56945 870 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 SLC8A3P57103 927 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 XRCC4Q13426 336 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 FASTKD3Q14CZ7 662 aaKnown RBP12.48□□□□□ -0.41
NUP54-202ENST00000502850 SEPT7Q16181 437 aaKnown RBP12.48□□□□□ -0.41
NUP54-202ENST00000502850 SV2CQ496J9 727 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 CCDC14Q49A88 953 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 FBXO47Q5MNV8 452 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 PPP1R26Q5T8A7 1209 aaPredicted RBP12.48□□□□□ -0.41
NUP54-202ENST00000502850 C9orf57Q5W0N0 161 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 SLC9A4Q6AI14 798 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 SLC26A9Q7LBE3 791 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 UNC45BQ8IWX7 931 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 FBXO36Q8NEA4 188 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 OR6B3Q8NGW1 331 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 FAM172AQ8WUF8 416 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 SLC35F5Q8WV83 523 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 APBB2Q92870 758 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 FAF2Q96CS3 445 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 TNIP3Q96KP6 325 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 HSFY1Q96LI6 401 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 CYTH2Q99418 400 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 MRPL45Q9BRJ2 306 aaKnown RBP12.48□□□□□ -0.41
NUP54-202ENST00000502850 DHRS4Q9BTZ2 278 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 FAM49AQ9H0Q0 323 aaPredicted RBP12.48□□□□□ -0.41
NUP54-202ENST00000502850 NGRNQ9NPE2 291 aaKnown RBP12.48□□□□□ -0.41
NUP54-202ENST00000502850 SETD4Q9NVD3 440 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 GDAP2Q9NXN4 497 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 KLHL14Q9P2G3 628 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 RABGEF1Q9UJ41 708 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 SLC12A4Q9UP95 1085 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 IKBKGQ9Y6K9 419 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 IQANK1A0A1B0GTG1 560 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 A8MXQ7 604 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 TM9SF1O15321 606 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 RECQL4O94761 1208 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 ASMTLO95671 621 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 ZBED1O96006 694 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 GSTA2P09210 222 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 GNAT1P11488 350 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 KCNE1P15382 129 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 CREB1P16220 341 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 CA4P22748 312 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 HOXA11P31270 313 aaPredicted RBP12.48□□□□□ -0.41
NUP54-202ENST00000502850 MSH2P43246 934 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 NR2C2P49116 596 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 CPT1AP50416 773 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 CCDC15Q0P6D6 951 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 CRHR2Q13324 411 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 CDO1Q16878 200 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 RNF43Q68DV7 783 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 ADGRD1Q6QNK2 874 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 ALKAL1Q6UXT8 129 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 CYP4V2Q6ZWL3 525 aaPredicted RBP12.48□□□□□ -0.41
NUP54-202ENST00000502850 BZW1Q7L1Q6 419 aaKnown RBP12.48□□□□□ -0.41
NUP54-202ENST00000502850 ACOT1Q86TX2 421 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 TTC30AQ86WT1 665 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 CRYBG2Q8N1P7 616 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 ANKRD52Q8NB46 1076 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 GDAP1Q8TB36 358 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 KAT2BQ92831 832 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 LRRC39Q96DD0 335 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 SNX25Q9H3E2 840 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 PCDH18Q9HCL0 1135 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 SAE1Q9UBE0 346 aaPredicted RBP12.48□□□□□ -0.41
NUP54-202ENST00000502850 STARD13Q9Y3M8 1113 aa12.48□□□□□ -0.41
NUP54-202ENST00000502850 SCN1AP35498 2009 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 GOLGA8MH3BSY2 632 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 RASSF9O75901 435 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 TMEM63AO94886 807 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 MAGEA6P43360 314 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 RPL34P49207 117 aaKnown RBP12.47□□□□□ -0.41
NUP54-202ENST00000502850 RGS7P49802 495 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 TAF6P49848 677 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 GPX6P59796 221 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 KCNJ11Q14654 390 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 MFSD10Q14728 455 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 DPYSL2Q16555 572 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 PDK4Q16654 411 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 C15orf59Q2T9L4 293 aaPredicted RBP12.47□□□□□ -0.41
NUP54-202ENST00000502850 BBS9Q3SYG4 887 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 HHATQ5VTY9 493 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 ANKRD22Q5VYY1 191 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 PMF1Q6P1K2 205 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 SCYL2Q6P3W7 929 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 FBXO46Q6PJ61 603 aaPredicted RBP12.47□□□□□ -0.41
NUP54-202ENST00000502850 C3orf62Q6ZUJ4 267 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 ANKMY2Q8IV38 441 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 PSTKQ8IV42 348 aaKnown RBP12.47□□□□□ -0.41
NUP54-202ENST00000502850 NME8Q8N427 588 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 PLD5Q8N7P1 536 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 C12orf29Q8N999 325 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 LRRC8CQ8TDW0 803 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms