RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 JADE3Q92613 823 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 CUL5Q93034 780 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 OPTNQ96CV9 577 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 WNK4Q96J92 1243 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 PIWIL1Q96J94 861 aaKnown RBP4.42□□□□□ -1.7
BRCA1-220ENST00000492859 FAM111AQ96PZ2 611 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 SIN3AQ96ST3 1273 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 SECISBP2Q96T21 854 aaKnown RBP4.42□□□□□ -1.7
BRCA1-220ENST00000492859 UHRF1Q96T88 793 aaPredicted RBP4.42□□□□□ -1.7
BRCA1-220ENST00000492859 HNRNPABQ99729 332 aaKnown RBP4.42□□□□□ -1.7
BRCA1-220ENST00000492859 FAM83CQ9BQN1 747 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 CCDC77Q9BR77 488 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 ORAI3Q9BRQ5 295 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 KLF16Q9BXK1 252 aaPredicted RBP4.42□□□□□ -1.7
BRCA1-220ENST00000492859 MRPL37Q9BZE1 423 aaKnown RBP4.42□□□□□ -1.7
BRCA1-220ENST00000492859 CRNKL1Q9BZJ0 848 aaKnown RBP4.42□□□□□ -1.7
BRCA1-220ENST00000492859 FAM129AQ9BZQ8 928 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 TTYH3Q9C0H2 523 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 LSG1Q9H089 658 aaKnown RBP4.42□□□□□ -1.7
BRCA1-220ENST00000492859 LRRC19Q9H756 370 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 PCDH18Q9HCL0 1135 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 SPTLC3Q9NUV7 552 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 SENP1Q9P0U3 644 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 WHRNQ9P202 907 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 REV1Q9UBZ9 1251 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 CD300AQ9UGN4 299 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 FEM1BQ9UK73 627 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 USP15Q9Y4E8 981 aaPredicted RBP4.42□□□□□ -1.7
BRCA1-220ENST00000492859 SNX13Q9Y5W8 968 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 CLCA3PQ9Y6N3 262 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 FAM169AQ9Y6X4 670 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 PHLPP2Q6ZVD8 1323 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 TTC21AQ8NDW8 1320 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 IRS2Q9Y4H2 1338 aa4.42□□□□□ -1.7
BRCA1-220ENST00000492859 RUSC2Q8N2Y8 1516 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 C1orf232A0A0U1RR37 186 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 LOC105371267A0A1B0GV96 52 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 A0A1W2PRV1 198 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 KPNA7A9QM74 516 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 F8W810 466 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 F8W8V4 182 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 PSMD14O00487 310 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 PER2O15055 1255 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 TO15178 435 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 RRP8O43159 456 aaKnown RBP4.41□□□□□ -1.7
BRCA1-220ENST00000492859 GNA14O95837 355 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 SCGB1D1O95968 90 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 A1BGP04217 495 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 ALDH2P05091 517 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 IVLP07476 585 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 PFKMP08237 780 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 INHBAP08476 426 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 CSF1P09603 554 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 HNRNPA1P09651 372 aaKnown RBP eCLIP4.41□□□□□ -1.7
BRCA1-220ENST00000492859 RALAP11233 206 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 TIMP2P16035 220 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 PCSK2P16519 638 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 DDX5P17844 614 aaKnown RBP4.41□□□□□ -1.7
BRCA1-220ENST00000492859 RPA1P27694 616 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 STARP49675 285 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 VEGFBP49765 207 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 CCT4P50991 539 aaKnown RBP4.41□□□□□ -1.7
BRCA1-220ENST00000492859 ZNF81P51508 661 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 CLCNKAP51800 687 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 SEC24CP53992 1094 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 VAMP2P63027 116 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 CSTF3Q12996 717 aaKnown RBP4.41□□□□□ -1.7
BRCA1-220ENST00000492859 MSLNQ13421 630 aaPredicted RBP4.41□□□□□ -1.7
BRCA1-220ENST00000492859 TRA2AQ13595 282 aaKnown RBP eCLIP4.41□□□□□ -1.7
BRCA1-220ENST00000492859 PUM1Q14671 1186 aaKnown RBP eCLIP4.41□□□□□ -1.7
BRCA1-220ENST00000492859 PDK1Q15118 436 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 ZYXQ15942 572 aaKnown RBP4.41□□□□□ -1.7
BRCA1-220ENST00000492859 CLEC16AQ2KHT3 1053 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 SLC35G1Q2M3R5 365 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 ATXN7L2Q5T6C5 722 aaPredicted RBP4.41□□□□□ -1.7
BRCA1-220ENST00000492859 COL13A1Q5TAT6 717 aaPredicted RBP4.41□□□□□ -1.7
BRCA1-220ENST00000492859 NBPF14Q5TI25 921 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 LIN9Q5TKA1 542 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 RRAGBQ5VZM2 374 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 NOTUMQ6P988 496 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 TUBA3EQ6PEY2 450 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 BORAQ6PGQ7 559 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 TRIM65Q6PJ69 517 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 DEGS2Q6QHC5 323 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 CATSPERGQ6ZRH7 1159 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 USP50Q70EL3 339 aaPredicted RBP4.41□□□□□ -1.7
BRCA1-220ENST00000492859 UNC13DQ70J99 1090 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 UBE2R2Q712K3 238 aaPredicted RBP4.41□□□□□ -1.7
BRCA1-220ENST00000492859 SV2BQ7L1I2 683 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 ARMCX2Q7L311 632 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 TAF8Q7Z7C8 310 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 ADGRA1Q86SQ6 560 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 METTL23Q86XA0 190 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 KSR1Q8IVT5 923 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 TRIM59Q8IWR1 403 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 CNTN4Q8IWV2 1026 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 TCAIMQ8N3R3 496 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 CCDC155Q8N6L0 562 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 TTLL6Q8N841 843 aa4.41□□□□□ -1.7
BRCA1-220ENST00000492859 KDF1Q8NAX2 398 aaPredicted RBP4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms