RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 TULP2O00295 520 aa26.01■■□□□ 1.75
UPF3A-209ENST00000492270 TMEM196Q5HYL7 178 aa26.01■■□□□ 1.75
UPF3A-209ENST00000492270 DGKKQ5KSL6 1271 aa26.01■■□□□ 1.75
UPF3A-209ENST00000492270 PIGZQ86VD9 579 aa26.01■■□□□ 1.75
UPF3A-209ENST00000492270 ANKRD52Q8NB46 1076 aa26.01■■□□□ 1.75
UPF3A-209ENST00000492270 NACA2Q9H009 215 aa26.01■■□□□ 1.75
UPF3A-209ENST00000492270 NUDT5Q9UKK9 219 aa26.01■■□□□ 1.75
UPF3A-209ENST00000492270 USP3Q9Y6I4 520 aa26.01■■□□□ 1.75
UPF3A-209ENST00000492270 TRDMT1O14717 391 aaKnown RBP26■■□□□ 1.75
UPF3A-209ENST00000492270 NFATC1O95644 943 aa26■■□□□ 1.75
UPF3A-209ENST00000492270 IRF1P10914 325 aa26■■□□□ 1.75
UPF3A-209ENST00000492270 ASCL5Q7RTU5 278 aa26■■□□□ 1.75
UPF3A-209ENST00000492270 CCDC186Q7Z3E2 898 aa26■■□□□ 1.75
UPF3A-209ENST00000492270 SCD5Q86SK9 330 aa26■■□□□ 1.75
UPF3A-209ENST00000492270 DDX42Q86XP3 938 aaKnown RBP eCLIP26■■□□□ 1.75
UPF3A-209ENST00000492270 TFAP2BQ92481 460 aa26■■□□□ 1.75
UPF3A-209ENST00000492270 KREMEN1Q96MU8 473 aa26■■□□□ 1.75
UPF3A-209ENST00000492270 CYLDQ9NQC7 956 aa26■■□□□ 1.75
UPF3A-209ENST00000492270 C2orf42Q9NWW7 574 aa26■■□□□ 1.75
UPF3A-209ENST00000492270 O00370 1275 aa25.99■■□□□ 1.75
UPF3A-209ENST00000492270 MDM4O15151 490 aa25.99■■□□□ 1.75
UPF3A-209ENST00000492270 EGFP01133 1207 aa25.99■■□□□ 1.75
UPF3A-209ENST00000492270 CYP17A1P05093 508 aa25.99■■□□□ 1.75
UPF3A-209ENST00000492270 VDRP11473 427 aa25.99■■□□□ 1.75
UPF3A-209ENST00000492270 GALK1P51570 392 aa25.99■■□□□ 1.75
UPF3A-209ENST00000492270 SATB1Q01826 763 aa25.99■■□□□ 1.75
UPF3A-209ENST00000492270 GCNT1Q02742 428 aa25.99■■□□□ 1.75
UPF3A-209ENST00000492270 PDE4CQ08493 712 aa25.99■■□□□ 1.75
UPF3A-209ENST00000492270 GAB4Q2WGN9 574 aa25.99■■□□□ 1.75
UPF3A-209ENST00000492270 ZNF528Q3MIS6 628 aa25.99■■□□□ 1.75
UPF3A-209ENST00000492270 PKN3Q6P5Z2 889 aa25.99■■□□□ 1.75
UPF3A-209ENST00000492270 UBA3Q8TBC4 463 aa25.99■■□□□ 1.75
UPF3A-209ENST00000492270 P2RY13Q9BPV8 354 aa25.99■■□□□ 1.75
UPF3A-209ENST00000492270 ZSWIM1Q9BR11 485 aa25.99■■□□□ 1.75
UPF3A-209ENST00000492270 CRACR2AQ9BSW2 395 aa25.99■■□□□ 1.75
UPF3A-209ENST00000492270 IER2Q9BTL4 223 aa25.99■■□□□ 1.75
UPF3A-209ENST00000492270 MTPAPQ9NVV4 582 aaKnown RBP eCLIP25.99■■□□□ 1.75
UPF3A-209ENST00000492270 NAGPAQ9UK23 515 aa25.99■■□□□ 1.75
UPF3A-209ENST00000492270 PRR23AA6NEV1 266 aa25.98■■□□□ 1.75
UPF3A-209ENST00000492270 GFRA3O60609 400 aa25.98■■□□□ 1.75
UPF3A-209ENST00000492270 TDGF1P13385 188 aa25.98■■□□□ 1.75
UPF3A-209ENST00000492270 RARGP13631 454 aa25.98■■□□□ 1.75
UPF3A-209ENST00000492270 BCAT1P54687 386 aa25.98■■□□□ 1.75
UPF3A-209ENST00000492270 TPD52L1Q16890 204 aaPredicted RBP25.98■■□□□ 1.75
UPF3A-209ENST00000492270 RAB41Q5JT25 222 aa25.98■■□□□ 1.75
UPF3A-209ENST00000492270 SPEM1Q8N4L4 309 aa25.98■■□□□ 1.75
UPF3A-209ENST00000492270 RBBP8NLQ8NC74 664 aaPredicted RBP25.98■■□□□ 1.75
UPF3A-209ENST00000492270 EZH1Q92800 747 aaPredicted RBP25.98■■□□□ 1.75
UPF3A-209ENST00000492270 UBXN6Q9BZV1 441 aa25.98■■□□□ 1.75
UPF3A-209ENST00000492270 SH3BP1Q9Y3L3 701 aa25.98■■□□□ 1.75
UPF3A-209ENST00000492270 E2F8A0AVK6 867 aa25.97■■□□□ 1.75
UPF3A-209ENST00000492270 PAEPP09466 180 aa25.97■■□□□ 1.75
UPF3A-209ENST00000492270 AMPD2Q01433 879 aa25.97■■□□□ 1.75
UPF3A-209ENST00000492270 APBA1Q02410 837 aa25.97■■□□□ 1.75
UPF3A-209ENST00000492270 BST2Q10589 180 aaKnown RBP25.97■■□□□ 1.75
UPF3A-209ENST00000492270 GRSF1Q12849 480 aaKnown RBP eCLIP25.97■■□□□ 1.75
UPF3A-209ENST00000492270 NR1H3Q13133 447 aa25.97■■□□□ 1.75
UPF3A-209ENST00000492270 HSP90AA4PQ58FG1 418 aa25.97■■□□□ 1.75
UPF3A-209ENST00000492270 ADGRG2Q8IZP9 1017 aa25.97■■□□□ 1.75
UPF3A-209ENST00000492270 KIAA1958Q8N8K9 716 aa25.97■■□□□ 1.75
UPF3A-209ENST00000492270 CD101Q93033 1021 aa25.97■■□□□ 1.75
UPF3A-209ENST00000492270 NKD2Q969F2 451 aaPredicted RBP25.97■■□□□ 1.75
UPF3A-209ENST00000492270 KLF16Q9BXK1 252 aaPredicted RBP25.97■■□□□ 1.75
UPF3A-209ENST00000492270 HESX1Q9UBX0 185 aa25.97■■□□□ 1.75
UPF3A-209ENST00000492270 SLC9A3R1O14745 358 aaPredicted RBP25.96■■□□□ 1.75
UPF3A-209ENST00000492270 XPO1O14980 1071 aaKnown RBP25.96■■□□□ 1.75
UPF3A-209ENST00000492270 BRD2P25440 801 aaKnown RBP25.96■■□□□ 1.75
UPF3A-209ENST00000492270 HOXC13P31276 330 aa25.96■■□□□ 1.75
UPF3A-209ENST00000492270 ATP5C1P36542 298 aaKnown RBP25.96■■□□□ 1.75
UPF3A-209ENST00000492270 OPRD1P41143 372 aa25.96■■□□□ 1.75
UPF3A-209ENST00000492270 MTIF2P46199 727 aaKnown RBP25.96■■□□□ 1.75
UPF3A-209ENST00000492270 CCR3P51677 355 aa25.96■■□□□ 1.75
UPF3A-209ENST00000492270 TKTL1P51854 596 aa25.96■■□□□ 1.75
UPF3A-209ENST00000492270 SLC8A3P57103 927 aa25.96■■□□□ 1.75
UPF3A-209ENST00000492270 DHCR24Q15392 516 aa25.96■■□□□ 1.75
UPF3A-209ENST00000492270 GJB7Q6PEY0 223 aa25.96■■□□□ 1.75
UPF3A-209ENST00000492270 MAMSTRQ6ZN01 415 aa25.96■■□□□ 1.75
UPF3A-209ENST00000492270 BBS7Q8IWZ6 715 aa25.96■■□□□ 1.75
UPF3A-209ENST00000492270 NDRG1Q92597 394 aaKnown RBP25.96■■□□□ 1.75
UPF3A-209ENST00000492270 EML5Q05BV3 1969 aa25.95■■□□□ 1.75
UPF3A-209ENST00000492270 SLC9A1P19634 815 aa25.95■■□□□ 1.74
UPF3A-209ENST00000492270 ERCC5P28715 1186 aaPredicted RBP25.95■■□□□ 1.74
UPF3A-209ENST00000492270 CXCL12P48061 93 aa25.95■■□□□ 1.74
UPF3A-209ENST00000492270 ZNF132P52740 706 aa25.95■■□□□ 1.74
UPF3A-209ENST00000492270 PKDCCQ504Y2 493 aa25.95■■□□□ 1.74
UPF3A-209ENST00000492270 C10orf120Q5SQS8 335 aa25.95■■□□□ 1.74
UPF3A-209ENST00000492270 TRIM65Q6PJ69 517 aa25.95■■□□□ 1.74
UPF3A-209ENST00000492270 RHBDF2Q6PJF5 856 aa25.95■■□□□ 1.74
UPF3A-209ENST00000492270 ZC3H14Q6PJT7 736 aaKnown RBP25.95■■□□□ 1.74
UPF3A-209ENST00000492270 SYNPOQ8N3V7 929 aa25.95■■□□□ 1.74
UPF3A-209ENST00000492270 NELL1Q92832 810 aa25.95■■□□□ 1.74
UPF3A-209ENST00000492270 ULBP1Q9BZM6 244 aa25.95■■□□□ 1.74
UPF3A-209ENST00000492270 THAP9Q9H5L6 903 aa25.95■■□□□ 1.74
UPF3A-209ENST00000492270 UBE2TQ9NPD8 197 aaPredicted RBP25.95■■□□□ 1.74
UPF3A-209ENST00000492270 KIAA1257Q9ULG3 409 aa25.95■■□□□ 1.74
UPF3A-209ENST00000492270 WDR3Q9UNX4 943 aaKnown RBP eCLIP25.95■■□□□ 1.74
UPF3A-209ENST00000492270 GREM1O60565 184 aa25.94■■□□□ 1.74
UPF3A-209ENST00000492270 RNF40O75150 1001 aa25.94■■□□□ 1.74
UPF3A-209ENST00000492270 PSEN1P49768 467 aa25.94■■□□□ 1.74
UPF3A-209ENST00000492270 ADIGQ0VDE8 80 aa25.94■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms