RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 TECTAO75443 2155 aa17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 COL4A2P08572 1712 aa17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 F8VZ95 297 aa17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 GOLGA6L19H0YKK7 550 aa17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 ARNTLO00327 626 aa17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 ZBED1O96006 694 aa17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 PDGFBP01127 241 aaPredicted RBP17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 CLCN1P35523 988 aa17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 PSEN1P49768 467 aa17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 BPIFB4P59827 614 aa17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 MTF1Q14872 753 aa17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 SLC44A4Q53GD3 710 aa17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 IER5LQ5T953 404 aa17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 PMF1Q6P1K2 205 aa17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 CC2D1AQ6P1N0 951 aaPredicted RBP17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 SCD5Q86SK9 330 aa17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 SLC47A2Q86VL8 602 aa17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 DDX42Q86XP3 938 aaKnown RBP eCLIP17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 TTC16Q8NEE8 873 aa17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 CSGALNACT1Q8TDX6 532 aa17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 ZFYVE19Q96K21 471 aa17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 HSFY1Q96LI6 401 aa17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 NACA2Q9H009 215 aa17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 NMUR1Q9HB89 426 aa17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 RTN4Q9NQC3 1192 aaKnown RBP17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 CYLDQ9NQC7 956 aa17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 SMPD4Q9NXE4 827 aa17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 NAGPAQ9UK23 515 aa17.12■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 LEFTY2O00292 366 aa17.11■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 EPHB6O15197 1021 aa17.11■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 SERPINC1P01008 464 aa17.11■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 RALAP11233 206 aa17.11■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 RARGP13631 454 aa17.11■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 LCP1P13796 627 aa17.11■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 GPD2P43304 727 aa17.11■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 ZXDBP98169 803 aa17.11■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 PRKCQQ04759 706 aa17.11■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 PM20D1Q6GTS8 502 aa17.11■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 LRSAM1Q6UWE0 723 aa17.11■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 TADA2BQ86TJ2 420 aa17.11■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 SCML4Q8N228 414 aa17.11■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 FBXL6Q8N531 539 aa17.11■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 SHDQ96IW2 340 aa17.11■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 CDK5RAP1Q96SZ6 601 aaKnown RBP17.11■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 TSPY26PQ9H489 355 aa17.11■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 NLRC4Q9NPP4 1024 aa17.11■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 CNGB3Q9NQW8 809 aa17.11■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 HEBP1Q9NRV9 189 aa17.11■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 GKN1Q9NS71 199 aa17.11■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.11■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 CLIC5Q9NZA1 410 aa17.11■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 PCDHGC3Q9UN70 934 aa17.11■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 TICRRQ7Z2Z1 1910 aa17.1■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 A0A1B0GTH6 734 aa17.1■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 TEX33O43247 280 aa17.1■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 ATP5C1P36542 298 aaKnown RBP17.1■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 ACADSBP45954 432 aa17.1■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 JAM2P57087 298 aa17.1■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 DAOAP59103 153 aa17.1■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 YWHAGP61981 247 aaKnown RBP eCLIP17.1■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 KLHDC10Q6PID8 442 aa17.1■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 TPRG1Q6ZUI0 275 aa17.1■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 BHLHA9Q7RTU4 235 aa17.1■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 SUGP1Q8IWZ8 645 aaKnown RBP17.1■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 FLCNQ8NFG4 579 aa17.1■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 OSCP1Q8WVF1 389 aa17.1■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 ZFRQ96KR1 1074 aaKnown RBP17.1■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 SPAG5Q96R06 1193 aa17.1■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 TBC1D17Q9HA65 648 aa17.1■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 PIK3R2O00459 728 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 GABBR2O75899 941 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 FBXO21O94952 628 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 TBX18O95935 607 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 CYP11B1P15538 503 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 KRT9P35527 623 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 SOX5P35711 763 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 IFNAR2P48551 515 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 RPL34P49207 117 aaKnown RBP17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 STARD6P59095 220 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 PDGFRLQ15198 375 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 C10orf120Q5SQS8 335 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 CWF19L1Q69YN2 538 aaKnown RBP17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 TRIM68Q6AZZ1 485 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 PASD1Q8IV76 773 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 ZNF276Q8N554 614 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 KIAA1958Q8N8K9 716 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 STK32AQ8WU08 396 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 IRGQQ8WZA9 623 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 NDRG1Q92597 394 aaKnown RBP17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 NAP1L5Q96NT1 182 aaPredicted RBP17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 FAM83CQ9BQN1 747 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 LHX5Q9H2C1 402 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 ST7Q9NRC1 585 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 DUS2Q9NX74 493 aaKnown RBP17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 CFAP97Q9P2B7 532 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 CYTH4Q9UIA0 394 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 DNMT3LQ9UJW3 386 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 NUDT5Q9UKK9 219 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 CEP83Q9Y592 693 aa17.09■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 PIAS3Q9Y6X2 628 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms