RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 MTMR4Q9NYA4 1195 aa3.79□□□□□ -1.8
CPSF3-205ENST00000489629 THRAP3Q9Y2W1 955 aaKnown RBP3.79□□□□□ -1.8
CPSF3-205ENST00000489629 CACNA1IQ9P0X4 2223 aa3.79□□□□□ -1.8
CPSF3-205ENST00000489629 LOC102723971A0A1B0GUV8 181 aa3.78□□□□□ -1.8
CPSF3-205ENST00000489629 A6NNZ2 444 aa3.78□□□□□ -1.8
CPSF3-205ENST00000489629 ISM1B1AKI9 464 aa3.78□□□□□ -1.8
CPSF3-205ENST00000489629 FAM227AF5H4B4 570 aa3.78□□□□□ -1.8
CPSF3-205ENST00000489629 INSIG1O15503 277 aa3.78□□□□□ -1.8
CPSF3-205ENST00000489629 PRPF3O43395 683 aaKnown RBP3.78□□□□□ -1.8
CPSF3-205ENST00000489629 RRP9O43818 475 aaKnown RBP3.78□□□□□ -1.8
CPSF3-205ENST00000489629 HGFP14210 728 aa3.78□□□□□ -1.8
CPSF3-205ENST00000489629 PRF1P14222 555 aa3.78□□□□□ -1.8
CPSF3-205ENST00000489629 CREB1P16220 341 aa3.78□□□□□ -1.8
CPSF3-205ENST00000489629 LINC00205P59089 165 aa3.78□□□□□ -1.8
CPSF3-205ENST00000489629 IGBP1P78318 339 aa3.78□□□□□ -1.8
CPSF3-205ENST00000489629 GHRHRQ02643 423 aa3.78□□□□□ -1.8
CPSF3-205ENST00000489629 CFHR3Q02985 330 aa3.78□□□□□ -1.8
CPSF3-205ENST00000489629 ARHGEF7Q14155 803 aa3.78□□□□□ -1.8
CPSF3-205ENST00000489629 TRIM71Q2Q1W2 868 aaKnown RBP3.78□□□□□ -1.8
CPSF3-205ENST00000489629 TMEM63BQ5T3F8 832 aa3.78□□□□□ -1.8
CPSF3-205ENST00000489629 SHC4Q6S5L8 630 aa3.78□□□□□ -1.8
CPSF3-205ENST00000489629 DEF8Q6ZN54 512 aa3.78□□□□□ -1.8
CPSF3-205ENST00000489629 SIGLEC11Q96RL6 698 aa3.78□□□□□ -1.8
CPSF3-205ENST00000489629 SACM1LQ9NTJ5 587 aa3.78□□□□□ -1.8
CPSF3-205ENST00000489629 MGAT4CQ9UBM8 478 aa3.78□□□□□ -1.8
CPSF3-205ENST00000489629 CNOT3O75175 753 aaKnown RBP3.77□□□□□ -1.81
CPSF3-205ENST00000489629 RASAL1O95294 804 aa3.77□□□□□ -1.81
CPSF3-205ENST00000489629 IL1R1P14778 569 aa3.77□□□□□ -1.81
CPSF3-205ENST00000489629 HOXB6P17509 224 aaKnown RBP3.77□□□□□ -1.81
CPSF3-205ENST00000489629 MCM5P33992 734 aa3.77□□□□□ -1.81
CPSF3-205ENST00000489629 PTDSS1P48651 473 aaKnown RBP3.77□□□□□ -1.81
CPSF3-205ENST00000489629 PLCD1P51178 756 aa3.77□□□□□ -1.81
CPSF3-205ENST00000489629 FMO1Q01740 532 aa3.77□□□□□ -1.81
CPSF3-205ENST00000489629 CFHR1Q03591 330 aa3.77□□□□□ -1.81
CPSF3-205ENST00000489629 C3orf38Q5JPI3 329 aa3.77□□□□□ -1.81
CPSF3-205ENST00000489629 TMTC4Q5T4D3 741 aa3.77□□□□□ -1.81
CPSF3-205ENST00000489629 CACHD1Q5VU97 1274 aa3.77□□□□□ -1.81
CPSF3-205ENST00000489629 DENND2CQ68D51 928 aa3.77□□□□□ -1.81
CPSF3-205ENST00000489629 TMEM65Q6PI78 240 aa3.77□□□□□ -1.81
CPSF3-205ENST00000489629 CRELD2Q6UXH1 353 aaPredicted RBP3.77□□□□□ -1.81
CPSF3-205ENST00000489629 DCDC5Q6ZRR9 648 aa3.77□□□□□ -1.81
CPSF3-205ENST00000489629 MAFAQ8NHW3 353 aaPredicted RBP3.77□□□□□ -1.81
CPSF3-205ENST00000489629 EDC3Q96F86 508 aaKnown RBP3.77□□□□□ -1.81
CPSF3-205ENST00000489629 SNX15Q9NRS6 342 aa3.77□□□□□ -1.81
CPSF3-205ENST00000489629 COL20A1Q9P218 1284 aa3.77□□□□□ -1.81
CPSF3-205ENST00000489629 DKK4Q9UBT3 224 aa3.77□□□□□ -1.81
CPSF3-205ENST00000489629 ASAP1Q9ULH1 1129 aa3.77□□□□□ -1.81
CPSF3-205ENST00000489629 RIMKLBQ9ULI2 386 aa3.77□□□□□ -1.81
CPSF3-205ENST00000489629 CFAP69A5D8W1 941 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 A8MVJ9 347 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 EXOC5O00471 708 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 RGS10O43665 173 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 TMPRSS11DO60235 418 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 MARCH6O60337 910 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 TLR2O60603 784 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 RASSF9O75901 435 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 TMEM191BP0C7N4 346 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 BRAFP15056 766 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 GATMP50440 423 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 POLGP54098 1239 aaPredicted RBP3.76□□□□□ -1.81
CPSF3-205ENST00000489629 DEUP1Q05D60 604 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 RAPGEF1Q13905 1077 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 CNGA2Q16280 664 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 LEXMQ3ZCV2 418 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 FAM102BQ5T8I3 360 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 RANBP10Q6VN20 620 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 USP49Q70CQ1 688 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 ZDHHC17Q8IUH5 632 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 SAMD14Q8IZD0 417 aaPredicted RBP3.76□□□□□ -1.81
CPSF3-205ENST00000489629 METTL25Q8N6Q8 603 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 CUL5Q93034 780 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 STK31Q9BXU1 1019 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 CHST8Q9H2A9 424 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 C1orf112Q9NSG2 853 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 AFF4Q9UHB7 1163 aaKnown RBP3.76□□□□□ -1.81
CPSF3-205ENST00000489629 ZMYM2Q9UBW7 1377 aa3.76□□□□□ -1.81
CPSF3-205ENST00000489629 PIAS2O75928 621 aa3.75□□□□□ -1.81
CPSF3-205ENST00000489629 PARP1P09874 1014 aaKnown RBP3.75□□□□□ -1.81
CPSF3-205ENST00000489629 U2AF1L5P0DN76 240 aaPredicted RBP3.75□□□□□ -1.81
CPSF3-205ENST00000489629 TXNP10599 105 aaKnown RBP3.75□□□□□ -1.81
CPSF3-205ENST00000489629 CTSAP10619 480 aa3.75□□□□□ -1.81
CPSF3-205ENST00000489629 MYF5P13349 255 aa3.75□□□□□ -1.81
CPSF3-205ENST00000489629 ACVR2AP27037 513 aa3.75□□□□□ -1.81
CPSF3-205ENST00000489629 MTHFSP49914 203 aa3.75□□□□□ -1.81
CPSF3-205ENST00000489629 CPT1AP50416 773 aa3.75□□□□□ -1.81
CPSF3-205ENST00000489629 PGDP52209 483 aa3.75□□□□□ -1.81
CPSF3-205ENST00000489629 ITGA8P53708 1063 aa3.75□□□□□ -1.81
CPSF3-205ENST00000489629 RPS16P62249 146 aaKnown RBP3.75□□□□□ -1.81
CPSF3-205ENST00000489629 U2AF1Q01081 240 aaKnown RBP eCLIP3.75□□□□□ -1.81
CPSF3-205ENST00000489629 SLC29A2Q14542 456 aa3.75□□□□□ -1.81
CPSF3-205ENST00000489629 KCNB1Q14721 858 aa3.75□□□□□ -1.81
CPSF3-205ENST00000489629 MINDY4Q4G0A6 757 aa3.75□□□□□ -1.81
CPSF3-205ENST00000489629 SESTD1Q86VW0 696 aa3.75□□□□□ -1.81
CPSF3-205ENST00000489629 C12orf76Q8N812 135 aaPredicted RBP3.75□□□□□ -1.81
CPSF3-205ENST00000489629 WIPF2Q8TF74 440 aaPredicted RBP3.75□□□□□ -1.81
CPSF3-205ENST00000489629 WASF1Q92558 559 aa3.75□□□□□ -1.81
CPSF3-205ENST00000489629 EBF3Q9H4W6 596 aa3.75□□□□□ -1.81
CPSF3-205ENST00000489629 TMEM184CQ9NVA4 438 aa3.75□□□□□ -1.81
CPSF3-205ENST00000489629 SEMA5BQ9P283 1151 aa3.75□□□□□ -1.81
CPSF3-205ENST00000489629 PI4KBQ9UBF8 816 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms