RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 EXOC4Q96A65 974 aa15.39■□□□□ 0.05
LIMS3-205ENST00000487150 NUP58Q9BVL2 599 aa15.39■□□□□ 0.05
LIMS3-205ENST00000487150 MFSD1Q9H3U5 465 aa15.39■□□□□ 0.05
LIMS3-205ENST00000487150 ARHGEF3Q9NR81 526 aa15.39■□□□□ 0.05
LIMS3-205ENST00000487150 DNMT3LQ9UJW3 386 aa15.39■□□□□ 0.05
LIMS3-205ENST00000487150 STRIP2Q9ULQ0 834 aa15.39■□□□□ 0.05
LIMS3-205ENST00000487150 PTPRDP23468 1912 aa15.39■□□□□ 0.05
LIMS3-205ENST00000487150 TMEM221A6NGB7 291 aa15.38■□□□□ 0.05
LIMS3-205ENST00000487150 PRR33A8MZF0 331 aa15.38■□□□□ 0.05
LIMS3-205ENST00000487150 M0R296 226 aa15.38■□□□□ 0.05
LIMS3-205ENST00000487150 COCHO43405 550 aa15.38■□□□□ 0.05
LIMS3-205ENST00000487150 GDI1P31150 447 aa15.38■□□□□ 0.05
LIMS3-205ENST00000487150 GPD2P43304 727 aa15.38■□□□□ 0.05
LIMS3-205ENST00000487150 MLLT6P55198 1093 aaPredicted RBP15.38■□□□□ 0.05
LIMS3-205ENST00000487150 JAM2P57087 298 aa15.38■□□□□ 0.05
LIMS3-205ENST00000487150 YWHAGP61981 247 aaKnown RBP eCLIP15.38■□□□□ 0.05
LIMS3-205ENST00000487150 AMPD2Q01433 879 aa15.38■□□□□ 0.05
LIMS3-205ENST00000487150 GRM2Q14416 872 aa15.38■□□□□ 0.05
LIMS3-205ENST00000487150 MTF1Q14872 753 aa15.38■□□□□ 0.05
LIMS3-205ENST00000487150 FIGNQ5HY92 759 aa15.38■□□□□ 0.05
LIMS3-205ENST00000487150 TRIM72Q6ZMU5 477 aa15.38■□□□□ 0.05
LIMS3-205ENST00000487150 RSRC2Q7L4I2 434 aaKnown RBP15.38■□□□□ 0.05
LIMS3-205ENST00000487150 SLC47A2Q86VL8 602 aa15.38■□□□□ 0.05
LIMS3-205ENST00000487150 TMEM35BQ8NCS4 154 aa15.38■□□□□ 0.05
LIMS3-205ENST00000487150 SH3RF2Q8TEC5 729 aa15.38■□□□□ 0.05
LIMS3-205ENST00000487150 ZSWIM1Q9BR11 485 aa15.38■□□□□ 0.05
LIMS3-205ENST00000487150 ULBP1Q9BZM6 244 aa15.38■□□□□ 0.05
LIMS3-205ENST00000487150 EDEM3Q9BZQ6 932 aa15.38■□□□□ 0.05
LIMS3-205ENST00000487150 NUCKS1Q9H1E3 243 aaKnown RBP15.38■□□□□ 0.05
LIMS3-205ENST00000487150 NLRC4Q9NPP4 1024 aa15.38■□□□□ 0.05
LIMS3-205ENST00000487150 ST7Q9NRC1 585 aa15.38■□□□□ 0.05
LIMS3-205ENST00000487150 TBC1D14Q9P2M4 693 aa15.38■□□□□ 0.05
LIMS3-205ENST00000487150 CHORDC1Q9UHD1 332 aaPredicted RBP15.38■□□□□ 0.05
LIMS3-205ENST00000487150 AJAP1Q9UKB5 411 aaPredicted RBP15.38■□□□□ 0.05
LIMS3-205ENST00000487150 DOCK8Q8NF50 2099 aa15.37■□□□□ 0.05
LIMS3-205ENST00000487150 CUL9Q8IWT3 2517 aa15.37■□□□□ 0.05
LIMS3-205ENST00000487150 A0A1W2PQH9 124 aa15.37■□□□□ 0.05
LIMS3-205ENST00000487150 GPR37L1O60883 481 aa15.37■□□□□ 0.05
LIMS3-205ENST00000487150 CFHP08603 1231 aa15.37■□□□□ 0.05
LIMS3-205ENST00000487150 RARGP13631 454 aa15.37■□□□□ 0.05
LIMS3-205ENST00000487150 FERP16591 822 aa15.37■□□□□ 0.05
LIMS3-205ENST00000487150 CLCN1P35523 988 aa15.37■□□□□ 0.05
LIMS3-205ENST00000487150 IFNAR2P48551 515 aa15.37■□□□□ 0.05
LIMS3-205ENST00000487150 RPL34P49207 117 aaKnown RBP15.37■□□□□ 0.05
LIMS3-205ENST00000487150 GPC5P78333 572 aa15.37■□□□□ 0.05
LIMS3-205ENST00000487150 PDCLQ13371 301 aa15.37■□□□□ 0.05
LIMS3-205ENST00000487150 ZNF77Q15935 545 aa15.37■□□□□ 0.05
LIMS3-205ENST00000487150 C10orf120Q5SQS8 335 aa15.37■□□□□ 0.05
LIMS3-205ENST00000487150 PMF1Q6P1K2 205 aa15.37■□□□□ 0.05
LIMS3-205ENST00000487150 BMP8AQ7Z5Y6 402 aa15.37■□□□□ 0.05
LIMS3-205ENST00000487150 ZDHHC17Q8IUH5 632 aa15.37■□□□□ 0.05
LIMS3-205ENST00000487150 SUGP1Q8IWZ8 645 aaKnown RBP15.37■□□□□ 0.05
LIMS3-205ENST00000487150 ZNF397Q8NF99 534 aaPredicted RBP15.37■□□□□ 0.05
LIMS3-205ENST00000487150 EPS8L1Q8TE68 723 aa15.37■□□□□ 0.05
LIMS3-205ENST00000487150 RNF139Q8WU17 664 aa15.37■□□□□ 0.05
LIMS3-205ENST00000487150 ATP2A3Q93084 1043 aa15.37■□□□□ 0.05
LIMS3-205ENST00000487150 OTUB2Q96DC9 234 aa15.37■□□□□ 0.05
LIMS3-205ENST00000487150 RPP25Q9BUL9 199 aaKnown RBP15.37■□□□□ 0.05
LIMS3-205ENST00000487150 SYNCQ9H7C4 482 aa15.37■□□□□ 0.05
LIMS3-205ENST00000487150 C8orf33Q9H7E9 229 aaPredicted RBP15.37■□□□□ 0.05
LIMS3-205ENST00000487150 ABCC13Q9NSE7 274 aa15.37■□□□□ 0.05
LIMS3-205ENST00000487150 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.37■□□□□ 0.05
LIMS3-205ENST00000487150 LSM7Q9UK45 103 aaKnown RBP15.37■□□□□ 0.05
LIMS3-205ENST00000487150 MRPS17Q9Y2R5 130 aaKnown RBP15.37■□□□□ 0.05
LIMS3-205ENST00000487150 CPQQ9Y646 472 aa15.37■□□□□ 0.05
LIMS3-205ENST00000487150 NOTCH4Q99466 2003 aa15.36■□□□□ 0.05
LIMS3-205ENST00000487150 E2F8A0AVK6 867 aa15.36■□□□□ 0.05
LIMS3-205ENST00000487150 MAN2B1O00754 1011 aa15.36■□□□□ 0.05
LIMS3-205ENST00000487150 NARSO43776 548 aaKnown RBP15.36■□□□□ 0.05
LIMS3-205ENST00000487150 GFPT2O94808 682 aa15.36■□□□□ 0.05
LIMS3-205ENST00000487150 LCP1P13796 627 aa15.36■□□□□ 0.05
LIMS3-205ENST00000487150 RGS7P49802 495 aa15.36■□□□□ 0.05
LIMS3-205ENST00000487150 KLK7P49862 253 aa15.36■□□□□ 0.05
LIMS3-205ENST00000487150 KPNA1P52294 538 aaPredicted RBP15.36■□□□□ 0.05
LIMS3-205ENST00000487150 DAOAP59103 153 aa15.36■□□□□ 0.05
LIMS3-205ENST00000487150 COG7P83436 770 aa15.36■□□□□ 0.05
LIMS3-205ENST00000487150 NR1I3Q14994 352 aa15.36■□□□□ 0.05
LIMS3-205ENST00000487150 MLF2Q15773 248 aaPredicted RBP15.36■□□□□ 0.05
LIMS3-205ENST00000487150 BTBD8Q5XKL5 378 aa15.36■□□□□ 0.05
LIMS3-205ENST00000487150 PPP1R2P3Q6NXS1 205 aa15.36■□□□□ 0.05
LIMS3-205ENST00000487150 DENND1BQ6P3S1 775 aa15.36■□□□□ 0.05
LIMS3-205ENST00000487150 POTEHQ6S545 545 aa15.36■□□□□ 0.05
LIMS3-205ENST00000487150 TOGARAM2Q6ZUX3 1019 aa15.36■□□□□ 0.05
LIMS3-205ENST00000487150 BEND5Q7L4P6 421 aa15.36■□□□□ 0.05
LIMS3-205ENST00000487150 TMEM110Q86TL2 294 aa15.36■□□□□ 0.05
LIMS3-205ENST00000487150 SIX5Q8N196 739 aa15.36■□□□□ 0.05
LIMS3-205ENST00000487150 CPA6Q8N4T0 437 aa15.36■□□□□ 0.05
LIMS3-205ENST00000487150 KHSRPQ92945 711 aaKnown RBP eCLIP15.36■□□□□ 0.05
LIMS3-205ENST00000487150 ASIC4Q96FT7 647 aa15.36■□□□□ 0.05
LIMS3-205ENST00000487150 SLC4A5Q9BY07 1137 aa15.36■□□□□ 0.05
LIMS3-205ENST00000487150 SMG9Q9H0W8 520 aaKnown RBP15.36■□□□□ 0.05
LIMS3-205ENST00000487150 EPHX3Q9H6B9 360 aa15.36■□□□□ 0.05
LIMS3-205ENST00000487150 TMEM51Q9NW97 253 aa15.36■□□□□ 0.05
LIMS3-205ENST00000487150 SH3BP1Q9Y3L3 701 aa15.36■□□□□ 0.05
LIMS3-205ENST00000487150 LEFTY2O00292 366 aa15.35■□□□□ 0.05
LIMS3-205ENST00000487150 TULP2O00295 520 aa15.35■□□□□ 0.05
LIMS3-205ENST00000487150 EPHB6O15197 1021 aa15.35■□□□□ 0.05
LIMS3-205ENST00000487150 TEX33O43247 280 aa15.35■□□□□ 0.05
LIMS3-205ENST00000487150 NFATC1O95644 943 aa15.35■□□□□ 0.05
LIMS3-205ENST00000487150 GLI1P08151 1106 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms