RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 BMPR2Q13873 1038 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 MAPRE1Q15691 268 aaKnown RBP16.97■□□□□ 0.31
COL7A1-210ENST00000487017 TRIM60Q495X7 471 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 AARS2Q5JTZ9 985 aaKnown RBP16.97■□□□□ 0.31
COL7A1-210ENST00000487017 CCDC60Q8IWA6 550 aaPredicted RBP16.97■□□□□ 0.31
COL7A1-210ENST00000487017 RXFP2Q8WXD0 754 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 PARK7Q99497 189 aaKnown RBP16.97■□□□□ 0.31
COL7A1-210ENST00000487017 CYP3A43Q9HB55 503 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 TRMT6Q9UJA5 497 aaKnown RBP16.97■□□□□ 0.31
COL7A1-210ENST00000487017 JCADQ9P266 1359 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 AP1G2O75843 785 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 F9P00740 461 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 GMPSP49915 693 aaPredicted RBP16.97■□□□□ 0.31
COL7A1-210ENST00000487017 PTPN11Q06124 597 aaPredicted RBP16.97■□□□□ 0.31
COL7A1-210ENST00000487017 RUNX1T1Q06455 604 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 ATP6V0D2Q8N8Y2 350 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 TDRD5Q8NAT2 981 aaKnown RBP16.97■□□□□ 0.31
COL7A1-210ENST00000487017 E9PBE3 544 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 KLHL41O60662 606 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 TNFRSF8P28908 595 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 PPP3CCP48454 512 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 EN1Q05925 392 aaPredicted RBP16.97■□□□□ 0.31
COL7A1-210ENST00000487017 MRPL28Q13084 256 aaKnown RBP16.97■□□□□ 0.31
COL7A1-210ENST00000487017 ARHGEF7Q14155 803 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 FUT11Q495W5 492 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 FOXR1Q6PIV2 292 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 EIF1ADQ8N9N8 165 aaKnown RBP16.97■□□□□ 0.31
COL7A1-210ENST00000487017 GPRC5AQ8NFJ5 357 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 SIK3Q9Y2K2 1263 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 ODC1P11926 461 aa16.96■□□□□ 0.31
COL7A1-210ENST00000487017 C10orf120Q5SQS8 335 aa16.96■□□□□ 0.31
COL7A1-210ENST00000487017 GLB1LQ6UWU2 654 aa16.96■□□□□ 0.31
COL7A1-210ENST00000487017 VPS37AQ8NEZ2 397 aa16.96■□□□□ 0.31
COL7A1-210ENST00000487017 ZNF333Q96JL9 665 aa16.96■□□□□ 0.31
COL7A1-210ENST00000487017 CINPQ9BW66 212 aaPredicted RBP16.96■□□□□ 0.31
COL7A1-210ENST00000487017 CHST12Q9NRB3 414 aa16.96■□□□□ 0.31
COL7A1-210ENST00000487017 KLK14Q9P0G3 267 aa16.96■□□□□ 0.31
COL7A1-210ENST00000487017 RNF112Q9ULX5 631 aa16.96■□□□□ 0.31
COL7A1-210ENST00000487017 ADGRA3Q8IWK6 1321 aa16.96■□□□□ 0.31
COL7A1-210ENST00000487017 VWA5AO00534 786 aa16.96■□□□□ 0.31
COL7A1-210ENST00000487017 ATP9AO75110 1047 aa16.96■□□□□ 0.31
COL7A1-210ENST00000487017 IRF1P10914 325 aa16.96■□□□□ 0.31
COL7A1-210ENST00000487017 TIGD7Q6NT04 549 aaPredicted RBP16.96■□□□□ 0.31
COL7A1-210ENST00000487017 TBC1D19Q8N5T2 526 aa16.96■□□□□ 0.31
COL7A1-210ENST00000487017 EIF3LQ9Y262 564 aaKnown RBP16.96■□□□□ 0.31
COL7A1-210ENST00000487017 PCDHGC5Q9Y5F6 944 aa16.96■□□□□ 0.31
COL7A1-210ENST00000487017 ALDH1A1P00352 501 aa16.96■□□□□ 0.31
COL7A1-210ENST00000487017 CCDC159P0C7I6 412 aa16.96■□□□□ 0.31
COL7A1-210ENST00000487017 HARS2P49590 506 aaKnown RBP16.96■□□□□ 0.31
COL7A1-210ENST00000487017 CLCN3P51790 818 aa16.96■□□□□ 0.31
COL7A1-210ENST00000487017 TMPRSS6Q8IU80 811 aa16.96■□□□□ 0.31
COL7A1-210ENST00000487017 VCPIP1Q96JH7 1222 aa16.96■□□□□ 0.31
COL7A1-210ENST00000487017 NUDT12Q9BQG2 462 aa16.96■□□□□ 0.31
COL7A1-210ENST00000487017 BTBD10Q9BSF8 475 aa16.96■□□□□ 0.31
COL7A1-210ENST00000487017 ACO1P21399 889 aaKnown RBP16.96■□□□□ 0.31
COL7A1-210ENST00000487017 ZNF513Q8N8E2 541 aaPredicted RBP16.96■□□□□ 0.31
COL7A1-210ENST00000487017 BLOC1S5Q8TDH9 187 aa16.96■□□□□ 0.31
COL7A1-210ENST00000487017 THUMPD3Q9BV44 507 aaKnown RBP16.96■□□□□ 0.31
COL7A1-210ENST00000487017 HACL1Q9UJ83 578 aa16.96■□□□□ 0.31
COL7A1-210ENST00000487017 IQCA1LA6NCM1 817 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 GCNT1Q02742 428 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 TCP10LQ8TDR4 215 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 PXDNQ92626 1479 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 STX7O15400 261 aaKnown RBP16.95■□□□□ 0.3
COL7A1-210ENST00000487017 SLITRK3O94933 977 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 MGAT5Q09328 741 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 TTMPQ5BVD1 217 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 DEPDC1Q5TB30 811 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 MICU2Q8IYU8 434 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 APOPT1Q96IL0 206 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 IL1R1P14778 569 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 ZNF23P17027 643 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 ELK3P41970 407 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 KANSL1LA0AUZ9 987 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 HEATR9A2RTY3 570 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 DDTLA6NHG4 134 aaPredicted RBP16.95■□□□□ 0.3
COL7A1-210ENST00000487017 CFAP99D6REC4 459 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 NFIBO00712 420 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 STRNO43815 780 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 PGK2P07205 417 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 CYP2F1P24903 491 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 YAF2Q8IY57 180 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 EXOSC4Q9NPD3 245 aaKnown RBP16.95■□□□□ 0.3
COL7A1-210ENST00000487017 WWOXQ9NZC7 414 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 ACOT9Q9Y305 439 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 FRMPD4Q14CM0 1322 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 VWDEQ8N2E2 1590 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 GOLGA8TH3BQL2 631 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 PECAM1P16284 738 aaPredicted RBP16.95■□□□□ 0.3
COL7A1-210ENST00000487017 PEX5P50542 639 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 TBL3Q12788 808 aaKnown RBP16.95■□□□□ 0.3
COL7A1-210ENST00000487017 MPP3Q13368 585 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 PLEKHM3Q6ZWE6 761 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 PACS2Q86VP3 889 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 HES6Q96HZ4 224 aa16.95■□□□□ 0.3
COL7A1-210ENST00000487017 DRG1Q9Y295 367 aaKnown RBP16.95■□□□□ 0.3
COL7A1-210ENST00000487017 PREX1Q8TCU6 1659 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 FAM86B1E9PN63 330 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 FSBPO95073 299 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 FAM86B2P0C5J1 330 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms