RNA–Protein interactions for RNA: ENST00000486828.6

PDLIM7-207, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best)

Gene PDLIM7, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-207ENST00000486828 KRT4P19013 534 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 MSH2P43246 934 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 SNX16P57768 344 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 NCALDP61601 193 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 MGAT5Q09328 741 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 CBLBQ13191 982 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 DNAJC3Q13217 504 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 SNCBQ16143 134 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 UNC93AQ86WB7 457 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 FITM2Q8N6M3 262 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 BEST2Q8NFU1 509 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 STK32AQ8WU08 396 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 DCAKDQ8WVC6 231 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 RTP4Q96DX8 246 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 MAML3Q96JK9 1138 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 RMDN2Q96LZ7 410 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 NCAPGQ9BPX3 1015 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 GCOM2Q9BZD3 368 aaPredicted RBP18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 ECT2Q9H8V3 914 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 PCDH18Q9HCL0 1135 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 SETD4Q9NVD3 440 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 GPATCH2LQ9NWQ4 482 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 PAK5Q9P286 719 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 TUBGCP4Q9UGJ1 667 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 PHTF1Q9UMS5 762 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 CHMP2BQ9UQN3 213 aa18.74■□□□□ 0.59
PDLIM7-207ENST00000486828 CFAP69A5D8W1 941 aa18.73■□□□□ 0.59
PDLIM7-207ENST00000486828 MDM4O15151 490 aa18.73■□□□□ 0.59
PDLIM7-207ENST00000486828 PAPSS1O43252 624 aaPredicted RBP18.73■□□□□ 0.59
PDLIM7-207ENST00000486828 YARSP54577 528 aaKnown RBP18.73■□□□□ 0.59
PDLIM7-207ENST00000486828 C1QTNF8P60827 252 aa18.73■□□□□ 0.59
PDLIM7-207ENST00000486828 CCDC15Q0P6D6 951 aa18.73■□□□□ 0.59
PDLIM7-207ENST00000486828 GRB14Q14449 540 aa18.73■□□□□ 0.59
PDLIM7-207ENST00000486828 HHATQ5VTY9 493 aa18.73■□□□□ 0.59
PDLIM7-207ENST00000486828 SLC9A4Q6AI14 798 aa18.73■□□□□ 0.59
PDLIM7-207ENST00000486828 CATSPER4Q7RTX7 472 aa18.73■□□□□ 0.59
PDLIM7-207ENST00000486828 GPR142Q7Z601 462 aa18.73■□□□□ 0.59
PDLIM7-207ENST00000486828 SAPCD2Q86UD0 394 aa18.73■□□□□ 0.59
PDLIM7-207ENST00000486828 ZDHHC17Q8IUH5 632 aa18.73■□□□□ 0.59
PDLIM7-207ENST00000486828 PQLC3Q8N755 202 aa18.73■□□□□ 0.59
PDLIM7-207ENST00000486828 SNRNP25Q9BV90 132 aaKnown RBP18.73■□□□□ 0.59
PDLIM7-207ENST00000486828 EIF2AQ9BY44 585 aaKnown RBP18.73■□□□□ 0.59
PDLIM7-207ENST00000486828 ADAM33Q9BZ11 813 aa18.73■□□□□ 0.59
PDLIM7-207ENST00000486828 SCN1AP35498 2009 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 CCL15-CCL14A0A0B4J2E2 113 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 CHUKO15111 745 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 GPR32O75388 356 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 GABBR2O75899 941 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 GBP2P32456 591 aaPredicted RBP18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 ELK3P41970 407 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 CDC42EP1Q00587 391 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 MTM1Q13496 603 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 CCL15Q16663 113 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 ARHGAP17Q68EM7 881 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 IQSEC1Q6DN90 963 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 ECHDC2Q86YB7 292 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 IGDCC3Q8IVU1 814 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 SCUBE3Q8IX30 993 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 LRRC8CQ8TDW0 803 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 SPOCK2Q92563 424 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 FAF2Q96CS3 445 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 CYTH2Q99418 400 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 ZNF670Q9BS34 389 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 ABHD16BQ9H3Z7 469 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 GINS2Q9Y248 185 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 TEX264Q9Y6I9 313 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 BCLAF3A2AJT9 711 aaKnown RBP18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 ZNF487B1APH4 448 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 EDF1O60869 148 aaKnown RBP18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 GTF2A2P52657 109 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 BCAR1P56945 870 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 TMEM62Q0P6H9 643 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 CA9Q16790 459 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 SWT1Q5T5J6 900 aaKnown RBP18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 NOTUMQ6P988 496 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 LVRNQ6Q4G3 990 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 PCDH19Q8TAB3 1148 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 C18orf25Q96B23 403 aaPredicted RBP18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 FAM49AQ9H0Q0 323 aaPredicted RBP18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 CNTN3Q9P232 1028 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 TRIP11Q15643 1979 aa18.72■□□□□ 0.59
PDLIM7-207ENST00000486828 KAT6AQ92794 2004 aa18.71■□□□□ 0.59
PDLIM7-207ENST00000486828 KCNN4O15554 427 aa18.71■□□□□ 0.59
PDLIM7-207ENST00000486828 SPAG6O75602 509 aa18.71■□□□□ 0.59
PDLIM7-207ENST00000486828 HDAC4P56524 1084 aa18.71■□□□□ 0.59
PDLIM7-207ENST00000486828 C9orf57Q5W0N0 161 aa18.71■□□□□ 0.59
PDLIM7-207ENST00000486828 ALKAL1Q6UXT8 129 aa18.71■□□□□ 0.59
PDLIM7-207ENST00000486828 ANKRD23Q86SG2 305 aa18.71■□□□□ 0.59
PDLIM7-207ENST00000486828 TBC1D1Q86TI0 1168 aaPredicted RBP18.71■□□□□ 0.59
PDLIM7-207ENST00000486828 OR6B3Q8NGW1 331 aa18.71■□□□□ 0.59
PDLIM7-207ENST00000486828 BRI3BPQ8WY22 251 aa18.71■□□□□ 0.59
PDLIM7-207ENST00000486828 ALKBH8Q96BT7 664 aaKnown RBP18.71■□□□□ 0.59
PDLIM7-207ENST00000486828 TINF2Q9BSI4 451 aa18.71■□□□□ 0.59
PDLIM7-207ENST00000486828 FRMD8Q9BZ67 464 aaPredicted RBP18.71■□□□□ 0.59
PDLIM7-207ENST00000486828 RAB6BQ9NRW1 208 aa18.71■□□□□ 0.59
PDLIM7-207ENST00000486828 KBTBD13C9JR72 458 aa18.7■□□□□ 0.58
PDLIM7-207ENST00000486828 PIAS1O75925 651 aa18.7■□□□□ 0.58
PDLIM7-207ENST00000486828 ZBED1O96006 694 aa18.7■□□□□ 0.58
PDLIM7-207ENST00000486828 PTPN9P43378 593 aa18.7■□□□□ 0.58
PDLIM7-207ENST00000486828 PCBP1Q15365 356 aaKnown RBP eCLIP18.7■□□□□ 0.589e-7■■■■■ 32.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms