RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 ZMIZ1Q9ULJ6 1067 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 STRIP2Q9ULQ0 834 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 DUSP12Q9UNI6 340 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 COQ4Q9Y3A0 265 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 DENND4AQ7Z401 1863 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 UNC80Q8N2C7 3258 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 REV3LO60673 3130 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 TMEM221A6NGB7 291 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 HEPACAM2A8MVW5 462 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 PI4K2BG5E9Z4 385 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 M0R296 226 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 SLC9A3R1O14745 358 aaPredicted RBP8.47□□□□□ -1.05
USP40-216ENST00000485943 CAPN9O14815 690 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 PMM2O15305 246 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 NOL4O94818 638 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 SETSIPP0DME0 302 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 IRF1P10914 325 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 LCP1P13796 627 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 PDE4CQ08493 712 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 UBXN2BQ14CS0 331 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 ARHGAP29Q52LW3 1261 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 FAM78AQ5JUQ0 283 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 PRSS36Q5K4E3 855 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 C1orf220Q5T0J3 134 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 HECTD3Q5T447 861 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 BTBD8Q5XKL5 378 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 TXNDC8Q6A555 127 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 C1orf228Q6PIY5 440 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 TRIM67Q6ZTA4 783 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 C11orf57Q6ZUT1 292 aaPredicted RBP8.47□□□□□ -1.05
USP40-216ENST00000485943 CRYBG2Q8N1P7 616 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 SLC44A3Q8N4M1 653 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 CPA6Q8N4T0 437 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 OVCA2Q8WZ82 227 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 FGF14Q92915 247 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 FAM149B1Q96BN6 582 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 ASB16Q96NS5 453 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 KCNK16Q96T55 309 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 ANP32EQ9BTT0 268 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 TRIM62Q9BVG3 475 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 DUSP16Q9BY84 665 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 MIS12Q9H081 205 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 ZNF334Q9HCZ1 680 aaPredicted RBP8.47□□□□□ -1.05
USP40-216ENST00000485943 TDP1Q9NUW8 608 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 DNAJC12Q9UKB3 198 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 TSPAN16Q9UKR8 245 aa8.47□□□□□ -1.05
USP40-216ENST00000485943 TYW5A2RUC4 315 aaKnown RBP8.46□□□□□ -1.06
USP40-216ENST00000485943 MAN2B1O00754 1011 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 SART1O43290 800 aaKnown RBP8.46□□□□□ -1.06
USP40-216ENST00000485943 PFKLP17858 780 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 SLC9A1P19634 815 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 BRD2P25440 801 aaKnown RBP8.46□□□□□ -1.06
USP40-216ENST00000485943 ATP5C1P36542 298 aaKnown RBP8.46□□□□□ -1.06
USP40-216ENST00000485943 VIPR2P41587 438 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 ACADSBP45954 432 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 RAD23BP54727 409 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 EPHA5P54756 1037 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 HTR4Q13639 388 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 PPP2R5DQ14738 602 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 KRT31Q15323 416 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 CCDC142Q17RM4 750 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 PREPLQ4J6C6 727 aaPredicted RBP8.46□□□□□ -1.06
USP40-216ENST00000485943 C10orf120Q5SQS8 335 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 SCARA3Q6AZY7 606 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 TANGO2Q6ICL3 276 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 RBM43Q6ZSC3 357 aaKnown RBP8.46□□□□□ -1.06
USP40-216ENST00000485943 CLEC20AQ6ZU45 233 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 GAREM2Q75VX8 874 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 MON1AQ86VX9 555 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 ARHGEF19Q8IW93 802 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 CCDC117Q8IWD4 279 aaPredicted RBP8.46□□□□□ -1.06
USP40-216ENST00000485943 FUKQ8N0W3 1084 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 ARL14EPQ8N8R7 260 aaPredicted RBP8.46□□□□□ -1.06
USP40-216ENST00000485943 ANKRD52Q8NB46 1076 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 SLC4A11Q8NBS3 891 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 ZNF397Q8NF99 534 aaPredicted RBP8.46□□□□□ -1.06
USP40-216ENST00000485943 UBA3Q8TBC4 463 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 TSPY26PQ9H489 355 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 EPHX3Q9H6B9 360 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 PNPLA8Q9NP80 782 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 ARHGEF3Q9NR81 526 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 FAM207AQ9NSI2 230 aaPredicted RBP8.46□□□□□ -1.06
USP40-216ENST00000485943 DUS2Q9NX74 493 aaKnown RBP8.46□□□□□ -1.06
USP40-216ENST00000485943 SMPD4Q9NXE4 827 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 OBP2AQ9NY56 170 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 GMIPQ9P107 970 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 WNT16Q9UBV4 365 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 CHORDC1Q9UHD1 332 aaPredicted RBP8.46□□□□□ -1.06
USP40-216ENST00000485943 RASAL2Q9UJF2 1139 aa8.46□□□□□ -1.06
USP40-216ENST00000485943 DOCK8Q8NF50 2099 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 PTPRDP23468 1912 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 SOBPA7XYQ1 873 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 PRR33A8MZF0 331 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 ESPNB1AK53 854 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 XPO1O14980 1071 aaKnown RBP8.45□□□□□ -1.06
USP40-216ENST00000485943 CBFA2T2O43439 604 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 LZTS3O60299 673 aaPredicted RBP8.45□□□□□ -1.06
USP40-216ENST00000485943 TLR5O60602 858 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 NFATC1O95644 943 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 PON1P27169 355 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms