RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 CDK5RAP1Q96SZ6 601 aaKnown RBP16.72■□□□□ 0.27
UPF3A-208ENST00000484246 FAM83CQ9BQN1 747 aa16.72■□□□□ 0.27
UPF3A-208ENST00000484246 RNF38Q9H0F5 515 aa16.72■□□□□ 0.27
UPF3A-208ENST00000484246 LRRC4Q9HBW1 653 aa16.72■□□□□ 0.27
UPF3A-208ENST00000484246 RTN4Q9NQC3 1192 aaKnown RBP16.72■□□□□ 0.27
UPF3A-208ENST00000484246 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.72■□□□□ 0.27
UPF3A-208ENST00000484246 THG1LQ9NWX6 298 aaKnown RBP16.72■□□□□ 0.27
UPF3A-208ENST00000484246 CHORDC1Q9UHD1 332 aaPredicted RBP16.72■□□□□ 0.27
UPF3A-208ENST00000484246 OBSL1O75147 1896 aa16.71■□□□□ 0.27
UPF3A-208ENST00000484246 A0A1B0GTH6 734 aa16.71■□□□□ 0.27
UPF3A-208ENST00000484246 THAP12O43422 761 aa16.71■□□□□ 0.27
UPF3A-208ENST00000484246 ZBED1O96006 694 aa16.71■□□□□ 0.27
UPF3A-208ENST00000484246 CALCAP01258 141 aa16.71■□□□□ 0.27
UPF3A-208ENST00000484246 CLCN1P35523 988 aa16.71■□□□□ 0.27
UPF3A-208ENST00000484246 JAM2P57087 298 aa16.71■□□□□ 0.27
UPF3A-208ENST00000484246 ZXDBP98169 803 aa16.71■□□□□ 0.27
UPF3A-208ENST00000484246 UBXN1Q04323 297 aa16.71■□□□□ 0.27
UPF3A-208ENST00000484246 ADIGQ0VDE8 80 aa16.71■□□□□ 0.27
UPF3A-208ENST00000484246 RAPGEF1Q13905 1077 aa16.71■□□□□ 0.27
UPF3A-208ENST00000484246 PDGFRLQ15198 375 aa16.71■□□□□ 0.27
UPF3A-208ENST00000484246 CWF19L1Q69YN2 538 aaKnown RBP16.71■□□□□ 0.27
UPF3A-208ENST00000484246 C1orf228Q6PIY5 440 aa16.71■□□□□ 0.27
UPF3A-208ENST00000484246 TADA2BQ86TJ2 420 aa16.71■□□□□ 0.27
UPF3A-208ENST00000484246 SIX5Q8N196 739 aa16.71■□□□□ 0.27
UPF3A-208ENST00000484246 SH3RF2Q8TEC5 729 aa16.71■□□□□ 0.27
UPF3A-208ENST00000484246 IRGQQ8WZA9 623 aa16.71■□□□□ 0.27
UPF3A-208ENST00000484246 SHDQ96IW2 340 aa16.71■□□□□ 0.27
UPF3A-208ENST00000484246 ULBP1Q9BZM6 244 aa16.71■□□□□ 0.27
UPF3A-208ENST00000484246 LHX5Q9H2C1 402 aa16.71■□□□□ 0.27
UPF3A-208ENST00000484246 NMUR1Q9HB89 426 aa16.71■□□□□ 0.27
UPF3A-208ENST00000484246 ACP6Q9NPH0 428 aa16.71■□□□□ 0.27
UPF3A-208ENST00000484246 FAM207AQ9NSI2 230 aaPredicted RBP16.71■□□□□ 0.27
UPF3A-208ENST00000484246 OSER1Q9NX31 292 aa16.71■□□□□ 0.27
UPF3A-208ENST00000484246 CPQQ9Y646 472 aa16.71■□□□□ 0.27
UPF3A-208ENST00000484246 KIF26AQ9ULI4 1882 aaPredicted RBP16.71■□□□□ 0.27
UPF3A-208ENST00000484246 COL4A2P08572 1712 aa16.7■□□□□ 0.26
UPF3A-208ENST00000484246 A0A1W2PQC6 194 aa16.7■□□□□ 0.26
UPF3A-208ENST00000484246 A0A1W2PQH9 124 aa16.7■□□□□ 0.26
UPF3A-208ENST00000484246 LEFTY2O00292 366 aa16.7■□□□□ 0.26
UPF3A-208ENST00000484246 EPHB6O15197 1021 aa16.7■□□□□ 0.26
UPF3A-208ENST00000484246 GABBR2O75899 941 aa16.7■□□□□ 0.26
UPF3A-208ENST00000484246 FBXO21O94952 628 aa16.7■□□□□ 0.26
UPF3A-208ENST00000484246 USP8P40818 1118 aa16.7■□□□□ 0.26
UPF3A-208ENST00000484246 KLK7P49862 253 aa16.7■□□□□ 0.26
UPF3A-208ENST00000484246 CLCN5P51795 746 aa16.7■□□□□ 0.26
UPF3A-208ENST00000484246 TPM4P67936 248 aa16.7■□□□□ 0.26
UPF3A-208ENST00000484246 SLC44A4Q53GD3 710 aa16.7■□□□□ 0.26
UPF3A-208ENST00000484246 PMF1Q6P1K2 205 aa16.7■□□□□ 0.26
UPF3A-208ENST00000484246 DENND1BQ6P3S1 775 aa16.7■□□□□ 0.26
UPF3A-208ENST00000484246 LUZP1Q86V48 1076 aa16.7■□□□□ 0.26
UPF3A-208ENST00000484246 SIX6OS1Q8N1H7 587 aa16.7■□□□□ 0.26
UPF3A-208ENST00000484246 OSCP1Q8WVF1 389 aa16.7■□□□□ 0.26
UPF3A-208ENST00000484246 PBXIP1Q96AQ6 731 aa16.7■□□□□ 0.26
UPF3A-208ENST00000484246 SLC4A5Q9BY07 1137 aa16.7■□□□□ 0.26
UPF3A-208ENST00000484246 CCSER2Q9H7U1 834 aa16.7■□□□□ 0.26
UPF3A-208ENST00000484246 SHISA7A6NL88 538 aa16.69■□□□□ 0.26
UPF3A-208ENST00000484246 SART1O43290 800 aaKnown RBP16.69■□□□□ 0.26
UPF3A-208ENST00000484246 ABL1P00519 1130 aa16.69■□□□□ 0.26
UPF3A-208ENST00000484246 PNMA6AP0CW24 399 aaPredicted RBP16.69■□□□□ 0.26
UPF3A-208ENST00000484246 MBL2P11226 248 aaPredicted RBP16.69■□□□□ 0.26
UPF3A-208ENST00000484246 RALAP11233 206 aa16.69■□□□□ 0.26
UPF3A-208ENST00000484246 CDH5P33151 784 aaPredicted RBP16.69■□□□□ 0.26
UPF3A-208ENST00000484246 ACADSBP45954 432 aa16.69■□□□□ 0.26
UPF3A-208ENST00000484246 DAOAP59103 153 aa16.69■□□□□ 0.26
UPF3A-208ENST00000484246 POLR2FP61218 127 aaKnown RBP16.69■□□□□ 0.26
UPF3A-208ENST00000484246 FILIP1LQ4L180 1135 aa16.69■□□□□ 0.26
UPF3A-208ENST00000484246 IER5LQ5T953 404 aa16.69■□□□□ 0.26
UPF3A-208ENST00000484246 TMEM110Q86TL2 294 aa16.69■□□□□ 0.26
UPF3A-208ENST00000484246 SLC47A2Q86VL8 602 aa16.69■□□□□ 0.26
UPF3A-208ENST00000484246 NEK11Q8NG66 645 aa16.69■□□□□ 0.26
UPF3A-208ENST00000484246 EPS8L1Q8TE68 723 aa16.69■□□□□ 0.26
UPF3A-208ENST00000484246 OSBPL6Q9BZF3 934 aa16.69■□□□□ 0.26
UPF3A-208ENST00000484246 C8orf33Q9H7E9 229 aaPredicted RBP16.69■□□□□ 0.26
UPF3A-208ENST00000484246 HPS4Q9NQG7 708 aa16.69■□□□□ 0.26
UPF3A-208ENST00000484246 NAGPAQ9UK23 515 aa16.69■□□□□ 0.26
UPF3A-208ENST00000484246 CA14Q9ULX7 337 aa16.69■□□□□ 0.26
UPF3A-208ENST00000484246 E2F8A0AVK6 867 aa16.68■□□□□ 0.26
UPF3A-208ENST00000484246 PDGFBP01127 241 aaPredicted RBP16.68■□□□□ 0.26
UPF3A-208ENST00000484246 RARGP13631 454 aa16.68■□□□□ 0.26
UPF3A-208ENST00000484246 CYP11B1P15538 503 aa16.68■□□□□ 0.26
UPF3A-208ENST00000484246 SOX5P35711 763 aa16.68■□□□□ 0.26
UPF3A-208ENST00000484246 ATP5C1P36542 298 aaKnown RBP16.68■□□□□ 0.26
UPF3A-208ENST00000484246 YWHAGP61981 247 aaKnown RBP eCLIP16.68■□□□□ 0.26
UPF3A-208ENST00000484246 PDCLQ13371 301 aa16.68■□□□□ 0.26
UPF3A-208ENST00000484246 CC2D1AQ6P1N0 951 aaPredicted RBP16.68■□□□□ 0.26
UPF3A-208ENST00000484246 LRSAM1Q6UWE0 723 aa16.68■□□□□ 0.26
UPF3A-208ENST00000484246 BEND5Q7L4P6 421 aa16.68■□□□□ 0.26
UPF3A-208ENST00000484246 GPIHBP1Q8IV16 184 aa16.68■□□□□ 0.26
UPF3A-208ENST00000484246 SUGP1Q8IWZ8 645 aaKnown RBP16.68■□□□□ 0.26
UPF3A-208ENST00000484246 CSGALNACT1Q8TDX6 532 aa16.68■□□□□ 0.26
UPF3A-208ENST00000484246 DDX1Q92499 740 aaKnown RBP16.68■□□□□ 0.26
UPF3A-208ENST00000484246 KLF16Q9BXK1 252 aaPredicted RBP16.68■□□□□ 0.26
UPF3A-208ENST00000484246 TBC1D17Q9HA65 648 aa16.68■□□□□ 0.26
UPF3A-208ENST00000484246 HEBP1Q9NRV9 189 aa16.68■□□□□ 0.26
UPF3A-208ENST00000484246 GKN1Q9NS71 199 aa16.68■□□□□ 0.26
UPF3A-208ENST00000484246 DNMT3LQ9UJW3 386 aa16.68■□□□□ 0.26
UPF3A-208ENST00000484246 MYO6Q9UM54 1294 aa16.68■□□□□ 0.26
UPF3A-208ENST00000484246 DENND4CQ5VZ89 1909 aa16.68■□□□□ 0.26
UPF3A-208ENST00000484246 GOLGA6L19H0YKK7 550 aa16.67■□□□□ 0.26
UPF3A-208ENST00000484246 MAN2B1O00754 1011 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms