RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 CYP4F2P78329 520 aa7.08□□□□□ -1.28
USP40-213ENST00000483216 L1TD1Q5T7N2 865 aaKnown RBP7.08□□□□□ -1.28
USP40-213ENST00000483216 FCRLBQ6BAA4 426 aa7.08□□□□□ -1.28
USP40-213ENST00000483216 SUMO4Q6EEV6 95 aa7.08□□□□□ -1.28
USP40-213ENST00000483216 NOL8Q76FK4 1167 aaKnown RBP7.08□□□□□ -1.28
USP40-213ENST00000483216 ZNF700Q9H0M5 742 aa7.08□□□□□ -1.28
USP40-213ENST00000483216 AS3MTQ9HBK9 375 aa7.08□□□□□ -1.28
USP40-213ENST00000483216 ZBTB26Q9HCK0 441 aa7.08□□□□□ -1.28
USP40-213ENST00000483216 PTGFRNQ9P2B2 879 aa7.08□□□□□ -1.28
USP40-213ENST00000483216 SERGEFQ9UGK8 458 aa7.08□□□□□ -1.28
USP40-213ENST00000483216 AMFRQ9UKV5 643 aa7.08□□□□□ -1.28
USP40-213ENST00000483216 NCK2O43639 380 aa7.07□□□□□ -1.28
USP40-213ENST00000483216 SNX2O60749 519 aa7.07□□□□□ -1.28
USP40-213ENST00000483216 FGAP02671 866 aa7.07□□□□□ -1.28
USP40-213ENST00000483216 HOXA4Q00056 320 aaPredicted RBP7.07□□□□□ -1.28
USP40-213ENST00000483216 CLCA4Q14CN2 919 aa7.07□□□□□ -1.28
USP40-213ENST00000483216 IZUMO3Q5VZ72 239 aa7.07□□□□□ -1.28
USP40-213ENST00000483216 ZNF788Q6ZQV5 615 aa7.07□□□□□ -1.28
USP40-213ENST00000483216 PTCHD4Q6ZW05 846 aa7.07□□□□□ -1.28
USP40-213ENST00000483216 USP49Q70CQ1 688 aa7.07□□□□□ -1.28
USP40-213ENST00000483216 SFTPA1Q8IWL2 248 aa7.07□□□□□ -1.28
USP40-213ENST00000483216 CCDC150Q8NCX0 1101 aa7.07□□□□□ -1.28
USP40-213ENST00000483216 NTN5Q8WTR8 489 aaPredicted RBP7.07□□□□□ -1.28
USP40-213ENST00000483216 TNIP3Q96KP6 325 aa7.07□□□□□ -1.28
USP40-213ENST00000483216 GDF15Q99988 308 aa7.07□□□□□ -1.28
USP40-213ENST00000483216 SLC25A32Q9H2D1 315 aa7.07□□□□□ -1.28
USP40-213ENST00000483216 GJB4Q9NTQ9 266 aa7.07□□□□□ -1.28
USP40-213ENST00000483216 NKX1-2Q9UD57 310 aaPredicted RBP7.07□□□□□ -1.28
USP40-213ENST00000483216 STEAP1Q9UHE8 339 aa7.07□□□□□ -1.28
USP40-213ENST00000483216 COL15A1P39059 1388 aa7.07□□□□□ -1.28
USP40-213ENST00000483216 A8MVJ9 347 aa7.06□□□□□ -1.28
USP40-213ENST00000483216 CES2O00748 559 aa7.06□□□□□ -1.28
USP40-213ENST00000483216 SPRY2O43597 315 aa7.06□□□□□ -1.28
USP40-213ENST00000483216 FBLP22087 321 aaKnown RBP7.06□□□□□ -1.28
USP40-213ENST00000483216 CD38P28907 300 aa7.06□□□□□ -1.28
USP40-213ENST00000483216 NTSR1P30989 418 aa7.06□□□□□ -1.28
USP40-213ENST00000483216 ATICP31939 592 aa7.06□□□□□ -1.28
USP40-213ENST00000483216 PROK1P58294 105 aa7.06□□□□□ -1.28
USP40-213ENST00000483216 PMS2P11Q13670 270 aa7.06□□□□□ -1.28
USP40-213ENST00000483216 SYCE2Q6PIF2 218 aa7.06□□□□□ -1.28
USP40-213ENST00000483216 NAPRTQ6XQN6 538 aa7.06□□□□□ -1.28
USP40-213ENST00000483216 PTF1AQ7RTS3 328 aa7.06□□□□□ -1.28
USP40-213ENST00000483216 KRT73Q86Y46 540 aa7.06□□□□□ -1.28
USP40-213ENST00000483216 MBD3L2Q8NHZ7 208 aaPredicted RBP7.06□□□□□ -1.28
USP40-213ENST00000483216 WDYHV1Q96HA8 205 aa7.06□□□□□ -1.28
USP40-213ENST00000483216 SNX27Q96L92 541 aa7.06□□□□□ -1.28
USP40-213ENST00000483216 CHST12Q9NRB3 414 aa7.06□□□□□ -1.28
USP40-213ENST00000483216 SH3BP4Q9P0V3 963 aa7.06□□□□□ -1.28
USP40-213ENST00000483216 SLC27A6Q9Y2P4 619 aa7.06□□□□□ -1.28
USP40-213ENST00000483216 H7C1Q1 480 aa7.05□□□□□ -1.28
USP40-213ENST00000483216 PDE8BO95263 885 aa7.05□□□□□ -1.28
USP40-213ENST00000483216 HARSP12081 509 aaKnown RBP7.05□□□□□ -1.28
USP40-213ENST00000483216 GABRB3P28472 473 aa7.05□□□□□ -1.28
USP40-213ENST00000483216 RBL1P28749 1068 aa7.05□□□□□ -1.28
USP40-213ENST00000483216 PSG6Q00889 435 aa7.05□□□□□ -1.28
USP40-213ENST00000483216 ST3GAL2Q16842 350 aa7.05□□□□□ -1.28
USP40-213ENST00000483216 SLC35G1Q2M3R5 365 aa7.05□□□□□ -1.28
USP40-213ENST00000483216 RNASE12Q5GAN4 147 aaKnown RBP7.05□□□□□ -1.28
USP40-213ENST00000483216 DENND2CQ68D51 928 aa7.05□□□□□ -1.28
USP40-213ENST00000483216 CRTC1Q6UUV9 634 aa7.05□□□□□ -1.28
USP40-213ENST00000483216 TRIM72Q6ZMU5 477 aa7.05□□□□□ -1.28
USP40-213ENST00000483216 KIAA0408Q6ZU52 694 aa7.05□□□□□ -1.28
USP40-213ENST00000483216 TXLNBQ8N3L3 684 aa7.05□□□□□ -1.28
USP40-213ENST00000483216 TERB1Q8NA31 727 aa7.05□□□□□ -1.28
USP40-213ENST00000483216 HASPINQ8TF76 798 aa7.05□□□□□ -1.28
USP40-213ENST00000483216 GJA10Q969M2 543 aa7.05□□□□□ -1.28
USP40-213ENST00000483216 DAZAP1Q96EP5 407 aaKnown RBP7.05□□□□□ -1.28
USP40-213ENST00000483216 SGCZQ96LD1 299 aa7.05□□□□□ -1.28
USP40-213ENST00000483216 SNX18Q96RF0 628 aa7.05□□□□□ -1.28
USP40-213ENST00000483216 ELAC2Q9BQ52 826 aaKnown RBP7.05□□□□□ -1.28
USP40-213ENST00000483216 MACROD1Q9BQ69 325 aa7.05□□□□□ -1.28
USP40-213ENST00000483216 MAN2B2Q9Y2E5 1009 aa7.05□□□□□ -1.28
USP40-213ENST00000483216 TMPRSS11DO60235 418 aa7.04□□□□□ -1.28
USP40-213ENST00000483216 COQ9O75208 318 aa7.04□□□□□ -1.28
USP40-213ENST00000483216 RBMXL2O75526 392 aaKnown RBP7.04□□□□□ -1.28
USP40-213ENST00000483216 IDEP14735 1019 aa7.04□□□□□ -1.28
USP40-213ENST00000483216 CREB1P16220 341 aa7.04□□□□□ -1.28
USP40-213ENST00000483216 FPR3P25089 353 aa7.04□□□□□ -1.28
USP40-213ENST00000483216 SLC5A2P31639 672 aa7.04□□□□□ -1.28
USP40-213ENST00000483216 TFF2Q03403 129 aa7.04□□□□□ -1.28
USP40-213ENST00000483216 FHL3Q13643 280 aa7.04□□□□□ -1.28
USP40-213ENST00000483216 FAXCQ5TGI0 409 aa7.04□□□□□ -1.28
USP40-213ENST00000483216 MRNIPQ6NTE8 343 aa7.04□□□□□ -1.28
USP40-213ENST00000483216 DPY19L2P1Q6NXN4 242 aa7.04□□□□□ -1.28
USP40-213ENST00000483216 KIRREL2Q6UWL6 708 aa7.04□□□□□ -1.28
USP40-213ENST00000483216 CLEC9AQ6UXN8 241 aa7.04□□□□□ -1.28
USP40-213ENST00000483216 SRLQ86TD4 932 aa7.04□□□□□ -1.28
USP40-213ENST00000483216 FAM186BQ8IYM0 893 aa7.04□□□□□ -1.28
USP40-213ENST00000483216 METTL25Q8N6Q8 603 aa7.04□□□□□ -1.28
USP40-213ENST00000483216 C11orf44Q8N8P7 122 aa7.04□□□□□ -1.28
USP40-213ENST00000483216 SEMA6DQ8NFY4 1073 aa7.04□□□□□ -1.28
USP40-213ENST00000483216 CYP2W1Q8TAV3 490 aa7.04□□□□□ -1.28
USP40-213ENST00000483216 DEPTORQ8TB45 409 aa7.04□□□□□ -1.28
USP40-213ENST00000483216 CERS4Q9HA82 394 aa7.04□□□□□ -1.28
USP40-213ENST00000483216 NLRC4Q9NPP4 1024 aa7.04□□□□□ -1.28
USP40-213ENST00000483216 TMOD4Q9NZQ9 345 aa7.04□□□□□ -1.28
USP40-213ENST00000483216 FNIP2Q9P278 1114 aa7.04□□□□□ -1.28
USP40-213ENST00000483216 FNDC1Q4ZHG4 1894 aaPredicted RBP7.03□□□□□ -1.28
USP40-213ENST00000483216 CCDC194A0A1B0GVG4 234 aa7.03□□□□□ -1.28
USP40-213ENST00000483216 EEF1GP26641 437 aaKnown RBP7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms