RNA–Protein interactions for RNA: ENST00000482399.5

VPS52-218, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2 BASIC

Gene VPS52, Length 3,338 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-218ENST00000482399 LIN7AO14910 233 aaPredicted RBP13.2□□□□□ -0.3
VPS52-218ENST00000482399 SORBS2O94875 1100 aaKnown RBP13.2□□□□□ -0.3
VPS52-218ENST00000482399 TYK2P29597 1187 aa13.2□□□□□ -0.3
VPS52-218ENST00000482399 AP1B1Q10567 949 aa13.2□□□□□ -0.3
VPS52-218ENST00000482399 TMED1Q13445 227 aa13.2□□□□□ -0.3
VPS52-218ENST00000482399 CYTH1Q15438 398 aa13.2□□□□□ -0.3
VPS52-218ENST00000482399 OASLQ15646 514 aaKnown RBP13.2□□□□□ -0.3
VPS52-218ENST00000482399 XKR3Q5GH77 459 aa13.2□□□□□ -0.3
VPS52-218ENST00000482399 IL31Q6EBC2 164 aa13.2□□□□□ -0.3
VPS52-218ENST00000482399 TRIM42Q8IWZ5 723 aa13.2□□□□□ -0.3
VPS52-218ENST00000482399 ASCC2Q9H1I8 757 aaPredicted RBP13.2□□□□□ -0.3
VPS52-218ENST00000482399 EBF3Q9H4W6 596 aa13.2□□□□□ -0.3
VPS52-218ENST00000482399 APPL1Q9UKG1 709 aa13.2□□□□□ -0.3
VPS52-218ENST00000482399 DLEC1Q9Y238 1755 aa13.2□□□□□ -0.3
VPS52-218ENST00000482399 TTLL13PA6NNM8 815 aa13.2□□□□□ -0.3
VPS52-218ENST00000482399 DCXO43602 365 aa13.2□□□□□ -0.3
VPS52-218ENST00000482399 ZNF252P-AS1Q0IIN9 211 aa13.2□□□□□ -0.3
VPS52-218ENST00000482399 FASTKD1Q53R41 847 aaKnown RBP13.2□□□□□ -0.3
VPS52-218ENST00000482399 RAB6CQ53S08 254 aa13.2□□□□□ -0.3
VPS52-218ENST00000482399 DCAKDQ8WVC6 231 aa13.2□□□□□ -0.3
VPS52-218ENST00000482399 RAB6CQ9H0N0 254 aa13.2□□□□□ -0.3
VPS52-218ENST00000482399 STRIP2Q9ULQ0 834 aa13.2□□□□□ -0.3
VPS52-218ENST00000482399 NDC80O14777 642 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 MAGEB2O15479 319 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 HSPA4LO95757 839 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 SERPINB5P36952 375 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 CCNFP41002 786 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 GTF2A2P52657 109 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 SNRPFP62306 86 aaKnown RBP13.19□□□□□ -0.3
VPS52-218ENST00000482399 MFN1Q8IWA4 741 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 ZBTB8OSQ8IWT0 167 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 SULF1Q8IWU6 871 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 GSDMBQ8TAX9 411 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 SHKBP1Q8TBC3 707 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 PRPF31Q8WWY3 499 aaKnown RBP13.19□□□□□ -0.3
VPS52-218ENST00000482399 CLEC4DQ8WXI8 215 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 CNBD2Q96M20 576 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 ANKRD27Q96NW4 1050 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 CPXM1Q96SM3 734 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 TIPINQ9BVW5 301 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 XAB2Q9HCS7 855 aaKnown RBP13.19□□□□□ -0.3
VPS52-218ENST00000482399 DRG1Q9Y295 367 aaKnown RBP13.19□□□□□ -0.3
VPS52-218ENST00000482399 SNCAIPQ9Y6H5 919 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 ACO1P21399 889 aaKnown RBP13.19□□□□□ -0.3
VPS52-218ENST00000482399 TFDP2Q14188 446 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 DNAL1Q4LDG9 190 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 ZC3H12AQ5D1E8 599 aaKnown RBP13.19□□□□□ -0.3
VPS52-218ENST00000482399 RAPH1Q70E73 1250 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 TDRPQ86YL5 185 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 ICA1LQ8NDH6 482 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 HIC2Q96JB3 615 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 CGRRF1Q99675 332 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 ECSITQ9BQ95 431 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 ASNSD1Q9NWL6 643 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 ZNF212Q9UDV6 495 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 COL22A1Q8NFW1 1626 aaPredicted RBP13.19□□□□□ -0.3
VPS52-218ENST00000482399 A6NJR5 290 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 HMGCRP04035 888 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 DLDP09622 509 aaKnown RBP13.19□□□□□ -0.3
VPS52-218ENST00000482399 RAB27AP51159 221 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 COPAP53621 1224 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 RTP1P59025 263 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 YWHAEP62258 255 aaKnown RBP13.19□□□□□ -0.3
VPS52-218ENST00000482399 EFHC1Q5JVL4 640 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 GDPD5Q8WTR4 605 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 TRAPPC12Q8WVT3 735 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 RXFP2Q8WXD0 754 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 VCPIP1Q96JH7 1222 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 DNAJC1Q96KC8 554 aaKnown RBP13.19□□□□□ -0.3
VPS52-218ENST00000482399 GJD4Q96KN9 370 aaPredicted RBP13.19□□□□□ -0.3
VPS52-218ENST00000482399 ANLNQ9NQW6 1124 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 PICK1Q9NRD5 415 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 PDP2Q9P2J9 529 aa13.19□□□□□ -0.3
VPS52-218ENST00000482399 ZNF536O15090 1300 aa13.18□□□□□ -0.3
VPS52-218ENST00000482399 RARBP10826 455 aa13.18□□□□□ -0.3
VPS52-218ENST00000482399 ENO3P13929 434 aaPredicted RBP13.18□□□□□ -0.3
VPS52-218ENST00000482399 TRMT5Q32P41 509 aaKnown RBP13.18□□□□□ -0.3
VPS52-218ENST00000482399 N4BP2L1Q5TBK1 243 aaPredicted RBP13.18□□□□□ -0.3
VPS52-218ENST00000482399 GALNT15Q8N3T1 639 aa13.18□□□□□ -0.3
VPS52-218ENST00000482399 ENDOVQ8N8Q3 282 aaKnown RBP13.18□□□□□ -0.3
VPS52-218ENST00000482399 DNAAF3Q8N9W5 541 aa13.18□□□□□ -0.3
VPS52-218ENST00000482399 SNRNP27Q8WVK2 155 aaKnown RBP13.18□□□□□ -0.3
VPS52-218ENST00000482399 USP13Q92995 863 aaPredicted RBP13.18□□□□□ -0.3
VPS52-218ENST00000482399 NKD2Q969F2 451 aaPredicted RBP13.18□□□□□ -0.3
VPS52-218ENST00000482399 SCYL1Q96KG9 808 aa13.18□□□□□ -0.3
VPS52-218ENST00000482399 PANX3Q96QZ0 392 aa13.18□□□□□ -0.3
VPS52-218ENST00000482399 RNPEPQ9H4A4 650 aa13.18□□□□□ -0.3
VPS52-218ENST00000482399 MRPL42Q9Y6G3 142 aaKnown RBP13.18□□□□□ -0.3
VPS52-218ENST00000482399 MYO18AQ92614 2054 aaKnown RBP13.18□□□□□ -0.3
VPS52-218ENST00000482399 CREB3O43889 395 aa13.18□□□□□ -0.3
VPS52-218ENST00000482399 NPTXRO95502 500 aa13.18□□□□□ -0.3
VPS52-218ENST00000482399 GSTA2P09210 222 aa13.18□□□□□ -0.3
VPS52-218ENST00000482399 RAG1P15918 1043 aa13.18□□□□□ -0.3
VPS52-218ENST00000482399 GRIA1P42261 906 aa13.18□□□□□ -0.3
VPS52-218ENST00000482399 HSD17B4P51659 736 aa13.18□□□□□ -0.3
VPS52-218ENST00000482399 ITGA9Q13797 1035 aa13.18□□□□□ -0.3
VPS52-218ENST00000482399 TCEAL1Q15170 157 aa13.18□□□□□ -0.3
VPS52-218ENST00000482399 AMHR2Q16671 573 aa13.18□□□□□ -0.3
VPS52-218ENST00000482399 TAS1R3Q7RTX0 852 aa13.18□□□□□ -0.3
VPS52-218ENST00000482399 HPS6Q86YV9 775 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms