RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 SYT10Q6XYQ8 523 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 POLNQ7Z5Q5 900 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 DNAAF5Q86Y56 855 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 NT5C3BQ969T7 300 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 PGAP3Q96FM1 320 aaPredicted RBP10.65□□□□□ -0.7
USP39-215ENST00000481409 HES6Q96HZ4 224 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 PBKQ96KB5 322 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 MYRFLQ96LU7 910 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 PGLYRP2Q96PD5 576 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 SLITRK1Q96PX8 696 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 SEPT5Q99719 369 aaPredicted RBP10.65□□□□□ -0.7
USP39-215ENST00000481409 DDX23Q9BUQ8 820 aaKnown RBP10.65□□□□□ -0.7
USP39-215ENST00000481409 IRX2Q9BZI1 471 aaPredicted RBP10.65□□□□□ -0.7
USP39-215ENST00000481409 ULBP1Q9BZM6 244 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 ALG13Q9NP73 1137 aaKnown RBP10.65□□□□□ -0.7
USP39-215ENST00000481409 TLR8Q9NR97 1041 aaKnown RBP10.65□□□□□ -0.7
USP39-215ENST00000481409 METTL5Q9NRN9 209 aaKnown RBP10.65□□□□□ -0.7
USP39-215ENST00000481409 OLA1Q9NTK5 396 aaKnown RBP10.65□□□□□ -0.7
USP39-215ENST00000481409 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.65□□□□□ -0.7
USP39-215ENST00000481409 CLIC5Q9NZA1 410 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 LMCD1Q9NZU5 365 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 FBXW11Q9UKB1 542 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 YBX2Q9Y2T7 364 aaKnown RBP10.65□□□□□ -0.7
USP39-215ENST00000481409 MTCL1Q9Y4B5 1905 aaKnown RBP10.64□□□□□ -0.71
USP39-215ENST00000481409 PLXNA3P51805 1871 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 COL4A4P53420 1690 aaPredicted RBP10.64□□□□□ -0.71
USP39-215ENST00000481409 SOBPA7XYQ1 873 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 GRXCR1A8MXD5 290 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 PRRG1O14668 218 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 CAPN9O14815 690 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 ADAM12O43184 909 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 SPOPO43791 374 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 ENDOD1O94919 500 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 VNN2O95498 520 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 KRT7P08729 469 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 HNRNPA1P09651 372 aaKnown RBP eCLIP10.64□□□□□ -0.71
USP39-215ENST00000481409 PFKLP17858 780 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 COMTP21964 271 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 DNAJB2P25686 324 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 PSMA2P25787 234 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 GBP1P32455 592 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 TUBP50607 506 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 ERVFC1P60507 584 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 RPL7AP62424 266 aaKnown RBP10.64□□□□□ -0.71
USP39-215ENST00000481409 NNTQ13423 1086 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 CCDC142Q17RM4 750 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 LRIT3Q3SXY7 679 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 SLC25A52Q3SY17 297 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 C2CD6Q53TS8 623 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 FAM109BQ6ICB4 259 aaPredicted RBP10.64□□□□□ -0.71
USP39-215ENST00000481409 VSIG1Q86XK7 387 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 PSTKQ8IV42 348 aaKnown RBP10.64□□□□□ -0.71
USP39-215ENST00000481409 RHOT1Q8IXI2 618 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 ELMOD1Q8N336 334 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 LEMD2Q8NC56 503 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 MICAL1Q8TDZ2 1067 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 CENPIQ92674 756 aaPredicted RBP10.64□□□□□ -0.71
USP39-215ENST00000481409 KHSRPQ92945 711 aaKnown RBP eCLIP10.64□□□□□ -0.71
USP39-215ENST00000481409 PSMG2Q969U7 264 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 FAM149B1Q96BN6 582 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 WDR24Q96S15 920 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 TBCBQ99426 244 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 CARD9Q9H257 536 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 NKX2-4Q9H2Z4 354 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 CYP4F11Q9HBI6 524 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 TMEM30AQ9NV96 361 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 DDX56Q9NY93 547 aaKnown RBP10.64□□□□□ -0.71
USP39-215ENST00000481409 TJP2Q9UDY2 1190 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 ZMYM5Q9UJ78 669 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 HYOU1Q9Y4L1 999 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 YIPF1Q9Y548 306 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 INSL5Q9Y5Q6 135 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 SAR1BQ9Y6B6 198 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 GREB1Q4ZG55 1949 aa10.64□□□□□ -0.71
USP39-215ENST00000481409 SLC38A8A6NNN8 435 aa10.63□□□□□ -0.71
USP39-215ENST00000481409 GRM6O15303 877 aa10.63□□□□□ -0.71
USP39-215ENST00000481409 TGM5O43548 720 aa10.63□□□□□ -0.71
USP39-215ENST00000481409 PAPLNO95428 1278 aa10.63□□□□□ -0.71
USP39-215ENST00000481409 USP17L7P0C7H9 530 aa10.63□□□□□ -0.71
USP39-215ENST00000481409 ZDHHC11BP0C7U3 371 aa10.63□□□□□ -0.71
USP39-215ENST00000481409 RALAP11233 206 aa10.63□□□□□ -0.71
USP39-215ENST00000481409 MYOGP15173 224 aa10.63□□□□□ -0.71
USP39-215ENST00000481409 RPL17P18621 184 aaKnown RBP10.63□□□□□ -0.71
USP39-215ENST00000481409 CTNNA1P35221 906 aaKnown RBP10.63□□□□□ -0.71
USP39-215ENST00000481409 CETN2P41208 172 aa10.63□□□□□ -0.71
USP39-215ENST00000481409 CLCN4P51793 760 aa10.63□□□□□ -0.71
USP39-215ENST00000481409 KPNA1P52294 538 aaPredicted RBP10.63□□□□□ -0.71
USP39-215ENST00000481409 ZNF135P52742 658 aaPredicted RBP10.63□□□□□ -0.71
USP39-215ENST00000481409 YWHAGP61981 247 aaKnown RBP eCLIP10.63□□□□□ -0.71
USP39-215ENST00000481409 MLLT1Q03111 559 aaPredicted RBP10.63□□□□□ -0.71
USP39-215ENST00000481409 TAF12Q16514 161 aa10.63□□□□□ -0.71
USP39-215ENST00000481409 DDR2Q16832 855 aa10.63□□□□□ -0.71
USP39-215ENST00000481409 BOLA3Q53S33 107 aa10.63□□□□□ -0.71
USP39-215ENST00000481409 PLPP4Q5VZY2 271 aa10.63□□□□□ -0.71
USP39-215ENST00000481409 BSPRYQ5W0U4 402 aa10.63□□□□□ -0.71
USP39-215ENST00000481409 BTBD8Q5XKL5 378 aa10.63□□□□□ -0.71
USP39-215ENST00000481409 MSANTD2Q6P1R3 559 aa10.63□□□□□ -0.71
USP39-215ENST00000481409 KLHDC10Q6PID8 442 aa10.63□□□□□ -0.71
USP39-215ENST00000481409 BHLHA9Q7RTU4 235 aa10.63□□□□□ -0.71
USP39-215ENST00000481409 GPRIN1Q7Z2K8 1008 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms