RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 DERAQ9Y315 318 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 DUSP10Q9Y6W6 482 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 FER1L4A9Z1Z3 1794 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 NPEPPSL1A6NEC2 478 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 FAM90A20PA6NIJ5 464 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 ZAR1LA6NP61 321 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 CAPN14A8MX76 684 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 F5H697 171 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 CYP27B1O15528 508 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 PPP6R2O75170 966 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 RPP40O75818 363 aaKnown RBP5.85□□□□□ -1.47
UPF3B-203ENST00000478840 LARGE1O95461 756 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 C8AP07357 584 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 IFIT1P09914 478 aaKnown RBP5.85□□□□□ -1.47
UPF3B-203ENST00000478840 ATP1A3P13637 1013 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 SERPINA4P29622 427 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 NTSR1P30989 418 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 MAN2A2P49641 1150 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 TIRAPP58753 221 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 CFAP161Q6P656 301 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 GDF7Q7Z4P5 450 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 LRRC71Q8N4P6 559 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 CEP70Q8NHQ1 597 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 TMEM171Q8WVE6 324 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 FUBP1Q96AE4 644 aaKnown RBP5.85□□□□□ -1.47
UPF3B-203ENST00000478840 C3orf49Q96BT1 292 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 ZBTB45Q96K62 511 aaPredicted RBP5.85□□□□□ -1.47
UPF3B-203ENST00000478840 REEP2Q9BRK0 252 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 VN1R3Q9BXE9 311 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 GPR87Q9BY21 358 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 ABHD16BQ9H3Z7 469 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 TBC1D22BQ9NU19 505 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 BLOC1S4Q9NUP1 217 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 RIMKLBQ9ULI2 386 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 SLC27A6Q9Y2P4 619 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 SNX14Q9Y5W7 946 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 RPS6KL1Q9Y6S9 549 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 FPGT-TNNI3KV9GXZ4 949 aa5.85□□□□□ -1.47
UPF3B-203ENST00000478840 LMTK3Q96Q04 1460 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 GAGE12BA1L429 117 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 GAGE12HA6NDE8 117 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 PRSS47A8MTI9 375 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 PATE3B3GLJ2 98 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 GPR42O15529 346 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 ERN1O75460 977 aaKnown RBP5.84□□□□□ -1.47
UPF3B-203ENST00000478840 TBX18O95935 607 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 PLATP00750 562 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 RXRAP19793 462 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 ADORA2AP29274 412 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 CXADRP78310 365 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 FPGSQ05932 587 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 KHDRBS1Q07666 443 aaKnown RBP eCLIP5.84□□□□□ -1.47
UPF3B-203ENST00000478840 MTAPQ13126 283 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 ANKRD1Q15327 319 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 CYP2A13Q16696 494 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 GALNTL6Q49A17 601 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 TBC1D10BQ4KMP7 808 aaPredicted RBP5.84□□□□□ -1.47
UPF3B-203ENST00000478840 DGAT2L7PQ6IED9 249 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 Q6ZRM9 215 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 RASGRP2Q7LDG7 609 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 SGMS1Q86VZ5 419 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 OSCP1Q8WVF1 389 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 SNRNP27Q8WVK2 155 aaKnown RBP5.84□□□□□ -1.47
UPF3B-203ENST00000478840 GOLGA1Q92805 767 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 FAM136AQ96C01 138 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 HVCN1Q96D96 273 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 SSBP3Q9BWW4 388 aaPredicted RBP5.84□□□□□ -1.47
UPF3B-203ENST00000478840 GPR63Q9BZJ6 419 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 AMBRA1Q9C0C7 1298 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 PREBQ9HCU5 417 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 TMLHEQ9NVH6 421 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 NRBP1Q9UHY1 535 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 SERTAD3Q9UJW9 196 aa5.84□□□□□ -1.47
UPF3B-203ENST00000478840 A0A087X0M5 115 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 A0A1B0GX30 115 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 KRTAP23-1A1A580 65 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 SAC3D1A6NKF1 404 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 AHRRA9YTQ3 701 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 TSPAN3O60637 253 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 RPS6KA4O75676 772 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 CER1O95813 267 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 COMTP21964 271 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 MAGEA10P43363 369 aaPredicted RBP5.83□□□□□ -1.48
UPF3B-203ENST00000478840 SCNN1GP51170 649 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 ATXN1P54253 815 aaKnown RBP5.83□□□□□ -1.48
UPF3B-203ENST00000478840 KCTD2Q14681 263 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 NFIXQ14938 502 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 RPS6KA2Q15349 733 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 TBRG1Q3YBR2 411 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 CD300EQ496F6 205 aaPredicted RBP5.83□□□□□ -1.48
UPF3B-203ENST00000478840 PREPLQ4J6C6 727 aaPredicted RBP5.83□□□□□ -1.48
UPF3B-203ENST00000478840 CTXN3Q4LDR2 81 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 L1TD1Q5T7N2 865 aaKnown RBP5.83□□□□□ -1.48
UPF3B-203ENST00000478840 C4orf50Q6ZRC1 276 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 PIK3AP1Q6ZUJ8 805 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 BRINP3Q76B58 766 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 DTX2Q86UW9 622 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 IZUMO1Q8IYV9 350 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 ATG4AQ8WYN0 398 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 OVCA2Q8WZ82 227 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms