RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 TXNDC11Q6PKC3 985 aa16.42■□□□□ 0.22
HMGA1-206ENST00000478214 ENOSF1Q7L5Y1 443 aa16.42■□□□□ 0.22
HMGA1-206ENST00000478214 CCDC186Q7Z3E2 898 aa16.42■□□□□ 0.22
HMGA1-206ENST00000478214 SCD5Q86SK9 330 aa16.42■□□□□ 0.22
HMGA1-206ENST00000478214 ZNF687Q8N1G0 1237 aa16.42■□□□□ 0.22
HMGA1-206ENST00000478214 ZFRQ96KR1 1074 aaKnown RBP16.42■□□□□ 0.22
HMGA1-206ENST00000478214 LINC00597Q9H2U6 94 aa16.42■□□□□ 0.22
HMGA1-206ENST00000478214 SIX2Q9NPC8 291 aa16.42■□□□□ 0.22
HMGA1-206ENST00000478214 FANCLQ9NW38 375 aa16.42■□□□□ 0.22
HMGA1-206ENST00000478214 TAB2Q9NYJ8 693 aa16.42■□□□□ 0.22
HMGA1-206ENST00000478214 CFAP97Q9P2B7 532 aa16.42■□□□□ 0.22
HMGA1-206ENST00000478214 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.42■□□□□ 0.22
HMGA1-206ENST00000478214 TICRRQ7Z2Z1 1910 aa16.41■□□□□ 0.22
HMGA1-206ENST00000478214 SETSIPP0DME0 302 aa16.41■□□□□ 0.22
HMGA1-206ENST00000478214 TKTL1P51854 596 aa16.41■□□□□ 0.22
HMGA1-206ENST00000478214 FZD5Q13467 585 aa16.41■□□□□ 0.22
HMGA1-206ENST00000478214 EML3Q32P44 896 aa16.41■□□□□ 0.22
HMGA1-206ENST00000478214 RALGPS2Q86X27 583 aaPredicted RBP16.41■□□□□ 0.22
HMGA1-206ENST00000478214 MSANTD3Q96H12 275 aa16.41■□□□□ 0.22
HMGA1-206ENST00000478214 NACA2Q9H009 215 aa16.41■□□□□ 0.22
HMGA1-206ENST00000478214 CYLDQ9NQC7 956 aa16.41■□□□□ 0.22
HMGA1-206ENST00000478214 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.41■□□□□ 0.22
HMGA1-206ENST00000478214 NAGPAQ9UK23 515 aa16.41■□□□□ 0.22
HMGA1-206ENST00000478214 AJAP1Q9UKB5 411 aaPredicted RBP16.41■□□□□ 0.22
HMGA1-206ENST00000478214 NUDT5Q9UKK9 219 aa16.41■□□□□ 0.22
HMGA1-206ENST00000478214 MYH10P35580 1976 aa16.4■□□□□ 0.22
HMGA1-206ENST00000478214 BECN2A8MW95 431 aa16.4■□□□□ 0.22
HMGA1-206ENST00000478214 M0QYV0 167 aa16.4■□□□□ 0.22
HMGA1-206ENST00000478214 RARGP13631 454 aa16.4■□□□□ 0.22
HMGA1-206ENST00000478214 PLA2G4AP47712 749 aa16.4■□□□□ 0.22
HMGA1-206ENST00000478214 PTPN5P54829 565 aa16.4■□□□□ 0.22
HMGA1-206ENST00000478214 MYL5Q02045 173 aa16.4■□□□□ 0.22
HMGA1-206ENST00000478214 KCNMA1Q12791 1236 aa16.4■□□□□ 0.22
HMGA1-206ENST00000478214 KRT31Q15323 416 aa16.4■□□□□ 0.22
HMGA1-206ENST00000478214 STILQ15468 1287 aa16.4■□□□□ 0.22
HMGA1-206ENST00000478214 DPY19L2P1Q6NXN4 242 aa16.4■□□□□ 0.22
HMGA1-206ENST00000478214 NDRG1Q92597 394 aaKnown RBP16.4■□□□□ 0.22
HMGA1-206ENST00000478214 WBP2Q969T9 261 aa16.4■□□□□ 0.22
HMGA1-206ENST00000478214 CLDN23Q96B33 292 aa16.4■□□□□ 0.22
HMGA1-206ENST00000478214 CHFRQ96EP1 664 aa16.4■□□□□ 0.22
HMGA1-206ENST00000478214 FAM81BQ96LP2 452 aa16.4■□□□□ 0.22
HMGA1-206ENST00000478214 ULBP1Q9BZM6 244 aa16.4■□□□□ 0.22
HMGA1-206ENST00000478214 ECT2Q9H8V3 914 aa16.4■□□□□ 0.22
HMGA1-206ENST00000478214 LRRC4Q9HBW1 653 aa16.4■□□□□ 0.22
HMGA1-206ENST00000478214 ACP6Q9NPH0 428 aa16.4■□□□□ 0.22
HMGA1-206ENST00000478214 DNAJC12Q9UKB3 198 aa16.4■□□□□ 0.22
HMGA1-206ENST00000478214 PATJQ8NI35 1801 aa16.4■□□□□ 0.22
HMGA1-206ENST00000478214 H0Y858 1186 aa16.39■□□□□ 0.21
HMGA1-206ENST00000478214 MDM4O15151 490 aa16.39■□□□□ 0.21
HMGA1-206ENST00000478214 NCAM2O15394 837 aa16.39■□□□□ 0.21
HMGA1-206ENST00000478214 GABBR2O75899 941 aa16.39■□□□□ 0.21
HMGA1-206ENST00000478214 LETM1O95202 739 aaPredicted RBP16.39■□□□□ 0.21
HMGA1-206ENST00000478214 ZBED1O96006 694 aa16.39■□□□□ 0.21
HMGA1-206ENST00000478214 IRF1P10914 325 aa16.39■□□□□ 0.21
HMGA1-206ENST00000478214 ATP5C1P36542 298 aaKnown RBP16.39■□□□□ 0.21
HMGA1-206ENST00000478214 USP8P40818 1118 aa16.39■□□□□ 0.21
HMGA1-206ENST00000478214 PSEN1P49768 467 aa16.39■□□□□ 0.21
HMGA1-206ENST00000478214 RGS7P49802 495 aa16.39■□□□□ 0.21
HMGA1-206ENST00000478214 ADIGQ0VDE8 80 aa16.39■□□□□ 0.21
HMGA1-206ENST00000478214 PON2Q15165 354 aa16.39■□□□□ 0.21
HMGA1-206ENST00000478214 PM20D1Q6GTS8 502 aa16.39■□□□□ 0.21
HMGA1-206ENST00000478214 PMF1Q6P1K2 205 aa16.39■□□□□ 0.21
HMGA1-206ENST00000478214 C1orf228Q6PIY5 440 aa16.39■□□□□ 0.21
HMGA1-206ENST00000478214 DDX42Q86XP3 938 aaKnown RBP eCLIP16.39■□□□□ 0.21
HMGA1-206ENST00000478214 CPA6Q8N4T0 437 aa16.39■□□□□ 0.21
HMGA1-206ENST00000478214 SLC35F5Q8WV83 523 aa16.39■□□□□ 0.21
HMGA1-206ENST00000478214 SHC3Q92529 594 aa16.39■□□□□ 0.21
HMGA1-206ENST00000478214 SECISBP2LQ93073 1101 aaKnown RBP16.39■□□□□ 0.21
HMGA1-206ENST00000478214 ATP2A3Q93084 1043 aa16.39■□□□□ 0.21
HMGA1-206ENST00000478214 VPS16Q9H269 839 aa16.39■□□□□ 0.21
HMGA1-206ENST00000478214 LMAN1LQ9HAT1 526 aa16.39■□□□□ 0.21
HMGA1-206ENST00000478214 CLIC5Q9NZA1 410 aa16.39■□□□□ 0.21
HMGA1-206ENST00000478214 KIF26AQ9ULI4 1882 aaPredicted RBP16.39■□□□□ 0.21
HMGA1-206ENST00000478214 E2F8A0AVK6 867 aa16.38■□□□□ 0.21
HMGA1-206ENST00000478214 CHRNB1P11230 501 aa16.38■□□□□ 0.21
HMGA1-206ENST00000478214 LCP1P13796 627 aa16.38■□□□□ 0.21
HMGA1-206ENST00000478214 GNA15P30679 374 aa16.38■□□□□ 0.21
HMGA1-206ENST00000478214 GJA4P35212 333 aa16.38■□□□□ 0.21
HMGA1-206ENST00000478214 NHLH1Q02575 133 aa16.38■□□□□ 0.21
HMGA1-206ENST00000478214 NCAPHQ15003 741 aa16.38■□□□□ 0.21
HMGA1-206ENST00000478214 KLHL40Q2TBA0 621 aa16.38■□□□□ 0.21
HMGA1-206ENST00000478214 ANO6Q4KMQ2 910 aa16.38■□□□□ 0.21
HMGA1-206ENST00000478214 C10orf120Q5SQS8 335 aa16.38■□□□□ 0.21
HMGA1-206ENST00000478214 NAIF1Q69YI7 327 aaPredicted RBP16.38■□□□□ 0.21
HMGA1-206ENST00000478214 DENND1BQ6P3S1 775 aa16.38■□□□□ 0.21
HMGA1-206ENST00000478214 BHLHA9Q7RTU4 235 aa16.38■□□□□ 0.21
HMGA1-206ENST00000478214 AOPEPQ8N6M6 819 aa16.38■□□□□ 0.21
HMGA1-206ENST00000478214 KIAA1958Q8N8K9 716 aa16.38■□□□□ 0.21
HMGA1-206ENST00000478214 KCTD13Q8WZ19 329 aa16.38■□□□□ 0.21
HMGA1-206ENST00000478214 LSM14BQ9BX40 385 aaKnown RBP16.38■□□□□ 0.21
HMGA1-206ENST00000478214 KLF16Q9BXK1 252 aaPredicted RBP16.38■□□□□ 0.21
HMGA1-206ENST00000478214 RBM12Q9NTZ6 932 aaKnown RBP16.38■□□□□ 0.21
HMGA1-206ENST00000478214 SH3BP1Q9Y3L3 701 aa16.38■□□□□ 0.21
HMGA1-206ENST00000478214 FOXN3O00409 490 aaPredicted RBP16.37■□□□□ 0.21
HMGA1-206ENST00000478214 PIK3R2O00459 728 aa16.37■□□□□ 0.21
HMGA1-206ENST00000478214 SLC9A3R1O14745 358 aaPredicted RBP16.37■□□□□ 0.21
HMGA1-206ENST00000478214 THAP12O43422 761 aa16.37■□□□□ 0.21
HMGA1-206ENST00000478214 NFATC1O95644 943 aa16.37■□□□□ 0.21
HMGA1-206ENST00000478214 PNMA6AP0CW24 399 aaPredicted RBP16.37■□□□□ 0.21
HMGA1-206ENST00000478214 RALAP11233 206 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms