RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 SLC12A4Q9UP95 1085 aa12.74□□□□□ -0.37
PTPRF-212ENST00000477970 USP15Q9Y4E8 981 aaPredicted RBP12.74□□□□□ -0.37
PTPRF-212ENST00000477970 ASMTLO95671 621 aa12.74□□□□□ -0.37
PTPRF-212ENST00000477970 IFNB1P01574 187 aa12.74□□□□□ -0.37
PTPRF-212ENST00000477970 VIMP08670 466 aaKnown RBP12.74□□□□□ -0.37
PTPRF-212ENST00000477970 SDC4P31431 198 aa12.74□□□□□ -0.37
PTPRF-212ENST00000477970 BCAT1P54687 386 aa12.74□□□□□ -0.37
PTPRF-212ENST00000477970 DYNLT1P63172 113 aa12.74□□□□□ -0.37
PTPRF-212ENST00000477970 IL9RQ01113 521 aa12.74□□□□□ -0.37
PTPRF-212ENST00000477970 MAP2K5Q13163 448 aa12.74□□□□□ -0.37
PTPRF-212ENST00000477970 XRCC4Q13426 336 aa12.74□□□□□ -0.37
PTPRF-212ENST00000477970 MFSD10Q14728 455 aa12.74□□□□□ -0.37
PTPRF-212ENST00000477970 TAF5Q15542 800 aa12.74□□□□□ -0.37
PTPRF-212ENST00000477970 SOWAHAQ2M3V2 549 aa12.74□□□□□ -0.37
PTPRF-212ENST00000477970 TNS4Q8IZW8 715 aa12.74□□□□□ -0.37
PTPRF-212ENST00000477970 PRKAG3Q9UGI9 489 aa12.74□□□□□ -0.37
PTPRF-212ENST00000477970 TUBGCP4Q9UGJ1 667 aa12.74□□□□□ -0.37
PTPRF-212ENST00000477970 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.74□□□□□ -0.37
PTPRF-212ENST00000477970 SNX9Q9Y5X1 595 aa12.74□□□□□ -0.37
PTPRF-212ENST00000477970 ZNF865P0CJ78 1059 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-212ENST00000477970 TMED2Q15363 201 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 ANKRD22Q5VYY1 191 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 OLFML2BQ68BL8 750 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 FBXO46Q6PJ61 603 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-212ENST00000477970 DPH6Q7L8W6 267 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 PSTKQ8IV42 348 aaKnown RBP12.73□□□□□ -0.37
PTPRF-212ENST00000477970 SRRM1Q8IYB3 904 aaKnown RBP12.73□□□□□ -0.37
PTPRF-212ENST00000477970 PDIK1LQ8N165 341 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 HSFY1Q96LI6 401 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 USP29Q9HBJ7 922 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 PCDH18Q9HCL0 1135 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 KCNK9Q9NPC2 374 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 SAE1Q9UBE0 346 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-212ENST00000477970 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.73□□□□□ -0.37
PTPRF-212ENST00000477970 CAPN7Q9Y6W3 813 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 APOL1O14791 398 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 PAPSS1O43252 624 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-212ENST00000477970 CYP2C9P11712 490 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 ZFXP17010 805 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-212ENST00000477970 DPYSL2Q16555 572 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 FBXO47Q5MNV8 452 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 FNBP1LQ5T0N5 605 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 PLD5Q8N7P1 536 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 GBP7Q8N8V2 638 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-212ENST00000477970 C12orf29Q8N999 325 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 PYROXD1Q8WU10 500 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 KBTBD7Q8WVZ9 684 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 PIWIL1Q96J94 861 aaKnown RBP12.73□□□□□ -0.37
PTPRF-212ENST00000477970 WDR83Q9BRX9 315 aaKnown RBP12.73□□□□□ -0.37
PTPRF-212ENST00000477970 CALN1Q9BXU9 219 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 MCOLN1Q9GZU1 580 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 VPS37BQ9H9H4 285 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 TCP11X1B4DZS4 312 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 TYROBPO43914 113 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 GABBR2O75899 941 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 RECQL4O94761 1208 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 GSTA2P09210 222 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 ATP2A2P16615 1042 aaKnown RBP12.73□□□□□ -0.37
PTPRF-212ENST00000477970 STX2P32856 288 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 SCTRP47872 440 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 CPT1AP50416 773 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 MTFR1Q15390 333 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 C15orf59Q2T9L4 293 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-212ENST00000477970 UBXN11Q5T124 520 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 ACOT1Q86TX2 421 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 PQLC3Q8N755 202 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 MZB1Q8WU39 189 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 ALKBH8Q96BT7 664 aaKnown RBP12.73□□□□□ -0.37
PTPRF-212ENST00000477970 KATNAL1Q9BW62 490 aa12.73□□□□□ -0.37
PTPRF-212ENST00000477970 XPO7Q9UIA9 1087 aaKnown RBP12.73□□□□□ -0.37
PTPRF-212ENST00000477970 COL4A4P53420 1690 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-212ENST00000477970 DNM1LO00429 736 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 PPEF2O14830 753 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 RASSF9O75901 435 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 TMEM63AO94886 807 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 SUN1O94901 812 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 WARSP23381 471 aaKnown RBP12.72□□□□□ -0.37
PTPRF-212ENST00000477970 NR2C2P49116 596 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 PSEN2P49810 448 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 CRYBB1P53674 252 aaPredicted RBP12.72□□□□□ -0.37
PTPRF-212ENST00000477970 CCDC15Q0P6D6 951 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 KRT81Q14533 505 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 SNX17Q15036 470 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 SV2CQ496J9 727 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 SUGP1Q8IWZ8 645 aaKnown RBP12.72□□□□□ -0.37
PTPRF-212ENST00000477970 TOP6BLQ8N6T0 577 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 FAM172AQ8WUF8 416 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 SMC6Q96SB8 1091 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 ELAC2Q9BQ52 826 aaKnown RBP12.72□□□□□ -0.37
PTPRF-212ENST00000477970 TRABDQ9H4I3 376 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 RCOR3Q9P2K3 495 aaPredicted RBP12.72□□□□□ -0.37
PTPRF-212ENST00000477970 LRPAP1P30533 357 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 IFNAR2P48551 515 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 SH3PXD2AQ5TCZ1 1133 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 RNF43Q68DV7 783 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 DARS2Q6PI48 645 aaKnown RBP12.72□□□□□ -0.37
PTPRF-212ENST00000477970 STRADAQ7RTN6 431 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 TRPM8Q7Z2W7 1104 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 TLK2Q86UE8 772 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 FAM71DQ8N9W8 422 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms