RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 MIA3Q5JRA6 1907 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 A0A087X0B3 334 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 ARHGEF37A1IGU5 675 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 WDR27A2RRH5 827 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 ANKRD63C9JTQ0 380 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 ANHXE9PGG2 379 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 CUTAO60888 179 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 CPNE3O75131 537 aaKnown RBP7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 PPP6R2O75170 966 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 ABLIM3O94929 683 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 OAZ2O95190 189 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 GCNT3O95395 438 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 PDGFBP01127 241 aaPredicted RBP7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 LRG1P02750 347 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 MED14OSP0DP75 135 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 SRFP11831 508 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 PAX3P23760 479 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 GDNFP39905 211 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 AARSP49588 968 aaKnown RBP eCLIP7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 ACOT2P49753 483 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 NTHL1P78549 312 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 NHLH1Q02575 133 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 HTR4Q13639 388 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 ALCAMQ13740 583 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 PABPC1LQ4VXU2 614 aaKnown RBP7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 L1TD1Q5T7N2 865 aaKnown RBP7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 SPATA1Q5VX52 437 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 JADE1Q6IE81 842 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 DSTYKQ6XUX3 929 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 MTSS1LQ765P7 747 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 USP37Q86T82 979 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 CCDC65Q8IXS2 484 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 SLC44A3Q8N4M1 653 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 PDILTQ8N807 584 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 PRSS33Q8NF86 280 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 RSAD2Q8WXG1 361 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 FGF13Q92913 245 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 ACCSQ96QU6 501 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 STRA6Q9BX79 667 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 PANK2Q9BZ23 570 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 TNMDQ9H2S6 317 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 CUEDC2Q9H467 287 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 ASB7Q9H672 318 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 CARS2Q9HA77 564 aaKnown RBP7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 CYP4F11Q9HBI6 524 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 PANK4Q9NVE7 773 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 TBC1D7Q9P0N9 293 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 WNT16Q9UBV4 365 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 C2CD2Q9Y426 696 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 INSL5Q9Y5Q6 135 aa7.35□□□□□ -1.23
CCDC88A-213ENST00000476903 FRMD3A2A2Y4 597 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 OR6C75A6NL08 312 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 TISP43B9A030 160 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 NARSO43776 548 aaKnown RBP7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 IL18RAPO95256 599 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 F13A1P00488 732 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 RHOP08100 348 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 ODC1P11926 461 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 PTPN2P17706 415 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 TYMPP19971 482 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 ADSSP30520 456 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 CLCN5P51795 746 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 GUCY2FP51841 1108 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 CASP5P51878 434 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 LILRA4P59901 499 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 AMPD3Q01432 767 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 ADCY1Q08828 1119 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 GRM2Q14416 872 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 C9orf57Q5W0N0 161 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 ATL3Q6DD88 541 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 OVOS1Q6IE37 1185 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 STXBP4Q6ZWJ1 553 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 TCEAL8Q8IYN2 117 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 SYCP3Q8IZU3 236 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 ELMOD1Q8N336 334 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 IQUBQ8NA54 791 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 ITFG1Q8TB96 612 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 KCNG4Q8TDN1 519 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 CCDC74AQ96AQ1 378 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 DHX58Q96C10 678 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 DIRC2Q96SL1 478 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 FAM213AQ9BRX8 229 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 IRF2BPLQ9H1B7 796 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 TMEM206Q9H813 350 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 SSU72Q9NP77 194 aaKnown RBP7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 HCFC1R1Q9NWW0 138 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 DNMT3BQ9UBC3 853 aaKnown RBP7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 AFF4Q9UHB7 1163 aaKnown RBP7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 DSEQ9UL01 958 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 CFAP45Q9UL16 551 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 MRPS23Q9Y3D9 190 aaKnown RBP7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 NUMBLQ9Y6R0 609 aa7.34□□□□□ -1.23
CCDC88A-213ENST00000476903 ZNF638Q14966 1978 aaKnown RBP7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 DENND4CQ5VZ89 1909 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 ANO9A1A5B4 782 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 PIRO00625 290 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 ZNF197O14709 1029 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 PPEF2O14830 753 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 SEC24AO95486 1093 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 LDHAP00338 332 aaKnown RBP7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms