RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 SCUBE3Q8IX30 993 aa10.24□□□□□ -0.77
USP39-214ENST00000474572 TMEM86AQ8N2M4 240 aa10.24□□□□□ -0.77
USP39-214ENST00000474572 PCDH19Q8TAB3 1148 aa10.24□□□□□ -0.77
USP39-214ENST00000474572 SLC2A14Q8TDB8 520 aa10.24□□□□□ -0.77
USP39-214ENST00000474572 CLEC4CQ8WTT0 213 aa10.24□□□□□ -0.77
USP39-214ENST00000474572 RSAD2Q8WXG1 361 aa10.24□□□□□ -0.77
USP39-214ENST00000474572 NT5C3BQ969T7 300 aa10.24□□□□□ -0.77
USP39-214ENST00000474572 C9orf72Q96LT7 481 aa10.24□□□□□ -0.77
USP39-214ENST00000474572 XPO6Q96QU8 1125 aaKnown RBP10.24□□□□□ -0.77
USP39-214ENST00000474572 CCT8L2Q96SF2 557 aa10.24□□□□□ -0.77
USP39-214ENST00000474572 CALN1Q9BXU9 219 aa10.24□□□□□ -0.77
USP39-214ENST00000474572 DUSP16Q9BY84 665 aa10.24□□□□□ -0.77
USP39-214ENST00000474572 B3GNT5Q9BYG0 378 aa10.24□□□□□ -0.77
USP39-214ENST00000474572 ADAM33Q9BZ11 813 aa10.24□□□□□ -0.77
USP39-214ENST00000474572 ARHGAP39Q9C0H5 1083 aa10.24□□□□□ -0.77
USP39-214ENST00000474572 TSPYL2Q9H2G4 693 aaPredicted RBP10.24□□□□□ -0.77
USP39-214ENST00000474572 PRDM16Q9HAZ2 1276 aa10.24□□□□□ -0.77
USP39-214ENST00000474572 SPC25Q9HBM1 224 aa10.24□□□□□ -0.77
USP39-214ENST00000474572 SAYSD1Q9NPB0 183 aa10.24□□□□□ -0.77
USP39-214ENST00000474572 NGRNQ9NPE2 291 aaKnown RBP10.24□□□□□ -0.77
USP39-214ENST00000474572 RNF19AQ9NV58 838 aa10.24□□□□□ -0.77
USP39-214ENST00000474572 DNAJC17Q9NVM6 304 aaKnown RBP10.24□□□□□ -0.77
USP39-214ENST00000474572 SAE1Q9UBE0 346 aaPredicted RBP10.24□□□□□ -0.77
USP39-214ENST00000474572 ST3GAL5Q9UNP4 418 aa10.24□□□□□ -0.77
USP39-214ENST00000474572 PTPRDP23468 1912 aa10.24□□□□□ -0.77
USP39-214ENST00000474572 MEIS3P2A8K0S8 358 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 C9IYK1 514 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 CYB561D2O14569 222 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 APOL1O14791 398 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 GPR182O15218 404 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 INPPL1O15357 1258 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 TOMM70O94826 608 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 TMEM63AO94886 807 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 PGK1P00558 417 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 PDGFRBP09619 1106 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 RARBP10826 455 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 NPR3P17342 541 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 PTPN1P18031 435 aaKnown RBP10.23□□□□□ -0.77
USP39-214ENST00000474572 PAX3P23760 479 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 GCAP28676 217 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 MLH1P40692 756 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 MAGEA6P43360 314 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 SLCO1A2P46721 670 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 CCT5P48643 541 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 FLT3LGP49771 235 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 RAB27AP51159 221 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 SEC24CP53992 1094 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 ATP11AP98196 1134 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 ROR1Q01973 937 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 CACNB2Q08289 660 aaPredicted RBP10.23□□□□□ -0.77
USP39-214ENST00000474572 XRCC4Q13426 336 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 KRT81Q14533 505 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 CA9Q16790 459 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 CDO1Q16878 200 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 TRIM71Q2Q1W2 868 aaKnown RBP10.23□□□□□ -0.77
USP39-214ENST00000474572 ZC3H12AQ5D1E8 599 aaKnown RBP10.23□□□□□ -0.77
USP39-214ENST00000474572 EFHC2Q5JST6 749 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 OTUD1Q5VV17 481 aaPredicted RBP10.23□□□□□ -0.77
USP39-214ENST00000474572 KIAA0319Q5VV43 1072 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 VSTM1Q6UX27 236 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 NPNTQ6UXI9 565 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 AGMOQ6ZNB7 445 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 PIGZQ86VD9 579 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 MAML1Q92585 1016 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 P3H4Q92791 437 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 ARHGEF2Q92974 986 aaKnown RBP10.23□□□□□ -0.77
USP39-214ENST00000474572 SENP8Q96LD8 212 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 ZFP42Q96MM3 310 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 ZNF317Q96PQ6 595 aaPredicted RBP10.23□□□□□ -0.77
USP39-214ENST00000474572 SLC2A13Q96QE2 648 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 ZIC5Q96T25 663 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 CCDC77Q9BR77 488 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 USP29Q9HBJ7 922 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 MIOSQ9NXC5 875 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 MTMR10Q9NXD2 777 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.23□□□□□ -0.77
USP39-214ENST00000474572 RCOR3Q9P2K3 495 aaPredicted RBP10.23□□□□□ -0.77
USP39-214ENST00000474572 USP3Q9Y6I4 520 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 SQORQ9Y6N5 450 aa10.23□□□□□ -0.77
USP39-214ENST00000474572 SMIM23A6NLE4 172 aa10.22□□□□□ -0.77
USP39-214ENST00000474572 EBAG9O00559 213 aa10.22□□□□□ -0.77
USP39-214ENST00000474572 CHADO15335 359 aa10.22□□□□□ -0.77
USP39-214ENST00000474572 IFNB1P01574 187 aa10.22□□□□□ -0.77
USP39-214ENST00000474572 THP07101 528 aa10.22□□□□□ -0.77
USP39-214ENST00000474572 ASGR1P07306 291 aa10.22□□□□□ -0.77
USP39-214ENST00000474572 ZFXP17010 805 aaPredicted RBP10.22□□□□□ -0.77
USP39-214ENST00000474572 TFE3P19532 575 aaPredicted RBP10.22□□□□□ -0.77
USP39-214ENST00000474572 DRD4P21917 467 aa10.22□□□□□ -0.77
USP39-214ENST00000474572 L1CAMP32004 1257 aa10.22□□□□□ -0.77
USP39-214ENST00000474572 RPL9P32969 192 aaKnown RBP10.22□□□□□ -0.77
USP39-214ENST00000474572 NOS2P35228 1153 aa10.22□□□□□ -0.77
USP39-214ENST00000474572 RDXP35241 583 aaKnown RBP10.22□□□□□ -0.77
USP39-214ENST00000474572 MATKP42679 507 aa10.22□□□□□ -0.77
USP39-214ENST00000474572 LHX1P48742 406 aa10.22□□□□□ -0.77
USP39-214ENST00000474572 ARL4CP56559 192 aa10.22□□□□□ -0.77
USP39-214ENST00000474572 MRPS5P82675 430 aaKnown RBP10.22□□□□□ -0.77
USP39-214ENST00000474572 PRKCZQ05513 592 aa10.22□□□□□ -0.77
USP39-214ENST00000474572 TRIM32Q13049 653 aa10.22□□□□□ -0.77
USP39-214ENST00000474572 PTK7Q13308 1070 aa10.22□□□□□ -0.77
USP39-214ENST00000474572 KCNJ11Q14654 390 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms