RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 MXI1P50539 228 aa19.62■□□□□ 0.73
COL7A1-209ENST00000474432 SPEM2Q0P670 501 aa19.62■□□□□ 0.73
COL7A1-209ENST00000474432 DDX42Q86XP3 938 aaKnown RBP eCLIP19.62■□□□□ 0.73
COL7A1-209ENST00000474432 CAMKK1Q8N5S9 505 aa19.62■□□□□ 0.73
COL7A1-209ENST00000474432 FAM160A2Q8N612 972 aaPredicted RBP19.62■□□□□ 0.73
COL7A1-209ENST00000474432 GPR161Q8N6U8 529 aaKnown RBP19.62■□□□□ 0.73
COL7A1-209ENST00000474432 SLC4A11Q8NBS3 891 aa19.62■□□□□ 0.73
COL7A1-209ENST00000474432 CCDC34Q96HJ3 373 aa19.62■□□□□ 0.73
COL7A1-209ENST00000474432 HHIPQ96QV1 700 aa19.62■□□□□ 0.73
COL7A1-209ENST00000474432 KLF16Q9BXK1 252 aaPredicted RBP19.62■□□□□ 0.73
COL7A1-209ENST00000474432 FBXO44Q9H4M3 255 aa19.62■□□□□ 0.73
COL7A1-209ENST00000474432 PNPLA8Q9NP80 782 aa19.62■□□□□ 0.73
COL7A1-209ENST00000474432 CYLDQ9NQC7 956 aa19.62■□□□□ 0.73
COL7A1-209ENST00000474432 SLC8A2Q9UPR5 921 aa19.62■□□□□ 0.73
COL7A1-209ENST00000474432 SCML2Q9UQR0 700 aa19.62■□□□□ 0.73
COL7A1-209ENST00000474432 A0A0A0MRY4 1105 aa19.61■□□□□ 0.73
COL7A1-209ENST00000474432 GOLGA6L4A6NEF3 574 aa19.61■□□□□ 0.73
COL7A1-209ENST00000474432 CYP26A1O43174 497 aa19.61■□□□□ 0.73
COL7A1-209ENST00000474432 TLR5O60602 858 aa19.61■□□□□ 0.73
COL7A1-209ENST00000474432 EPB41P11171 864 aaKnown RBP19.61■□□□□ 0.73
COL7A1-209ENST00000474432 KIF11P52732 1056 aa19.61■□□□□ 0.73
COL7A1-209ENST00000474432 RAD23BP54727 409 aa19.61■□□□□ 0.73
COL7A1-209ENST00000474432 FKBP3Q00688 224 aaKnown RBP19.61■□□□□ 0.73
COL7A1-209ENST00000474432 DMC1Q14565 340 aa19.61■□□□□ 0.73
COL7A1-209ENST00000474432 ZNF394Q53GI3 561 aa19.61■□□□□ 0.73
COL7A1-209ENST00000474432 LY6G5CQ5SRR4 150 aa19.61■□□□□ 0.73
COL7A1-209ENST00000474432 SCD5Q86SK9 330 aa19.61■□□□□ 0.73
COL7A1-209ENST00000474432 BBS7Q8IWZ6 715 aa19.61■□□□□ 0.73
COL7A1-209ENST00000474432 ELOA2Q8IYF1 753 aaPredicted RBP19.61■□□□□ 0.73
COL7A1-209ENST00000474432 PHTF2Q8N3S3 785 aa19.61■□□□□ 0.73
COL7A1-209ENST00000474432 GAB3Q8WWW8 586 aa19.61■□□□□ 0.73
COL7A1-209ENST00000474432 SECISBP2LQ93073 1101 aaKnown RBP19.61■□□□□ 0.73
COL7A1-209ENST00000474432 SMARCE1Q969G3 411 aa19.61■□□□□ 0.73
COL7A1-209ENST00000474432 EXOC4Q96A65 974 aa19.61■□□□□ 0.73
COL7A1-209ENST00000474432 JAKMIP2Q96AA8 810 aa19.61■□□□□ 0.73
COL7A1-209ENST00000474432 DUSP16Q9BY84 665 aa19.61■□□□□ 0.73
COL7A1-209ENST00000474432 CISHQ9NSE2 258 aa19.61■□□□□ 0.73
COL7A1-209ENST00000474432 TBC1D14Q9P2M4 693 aa19.61■□□□□ 0.73
COL7A1-209ENST00000474432 GMEB2Q9UKD1 530 aa19.61■□□□□ 0.73
COL7A1-209ENST00000474432 RAB23Q9ULC3 237 aa19.61■□□□□ 0.73
COL7A1-209ENST00000474432 MYO18AQ92614 2054 aaKnown RBP19.61■□□□□ 0.73
COL7A1-209ENST00000474432 SLC16A3O15427 465 aaKnown RBP19.6■□□□□ 0.73
COL7A1-209ENST00000474432 SMC2O95347 1197 aa19.6■□□□□ 0.73
COL7A1-209ENST00000474432 ACO1P21399 889 aaKnown RBP19.6■□□□□ 0.73
COL7A1-209ENST00000474432 RSPO4Q2I0M5 234 aaPredicted RBP19.6■□□□□ 0.73
COL7A1-209ENST00000474432 ISM2Q6H9L7 571 aa19.6■□□□□ 0.73
COL7A1-209ENST00000474432 ERMP1Q7Z2K6 904 aa19.6■□□□□ 0.73
COL7A1-209ENST00000474432 ETFBKMTQ8IXQ9 262 aa19.6■□□□□ 0.73
COL7A1-209ENST00000474432 SLC35C1Q96A29 364 aa19.6■□□□□ 0.73
COL7A1-209ENST00000474432 TLR8Q9NR97 1041 aaKnown RBP19.6■□□□□ 0.73
COL7A1-209ENST00000474432 MAN1B1Q9UKM7 699 aa19.6■□□□□ 0.73
COL7A1-209ENST00000474432 USP3Q9Y6I4 520 aa19.6■□□□□ 0.73
COL7A1-209ENST00000474432 GADD45BO75293 160 aaPredicted RBP19.59■□□□□ 0.73
COL7A1-209ENST00000474432 ADH5P11766 374 aa19.59■□□□□ 0.73
COL7A1-209ENST00000474432 HNRNPLP14866 589 aaKnown RBP eCLIP19.59■□□□□ 0.73
COL7A1-209ENST00000474432 EIF2DP41214 584 aaKnown RBP19.59■□□□□ 0.73
COL7A1-209ENST00000474432 LRRC63Q05C16 580 aa19.59■□□□□ 0.73
COL7A1-209ENST00000474432 HTR3DQ70Z44 454 aa19.59■□□□□ 0.73
COL7A1-209ENST00000474432 TMEM25Q86YD3 366 aa19.59■□□□□ 0.73
COL7A1-209ENST00000474432 OTUB2Q96DC9 234 aa19.59■□□□□ 0.73
COL7A1-209ENST00000474432 MTPAPQ9NVV4 582 aaKnown RBP eCLIP19.59■□□□□ 0.73
COL7A1-209ENST00000474432 EBF1Q9UH73 591 aa19.59■□□□□ 0.73
COL7A1-209ENST00000474432 A0A1W2PQH9 124 aa19.58■□□□□ 0.72
COL7A1-209ENST00000474432 HOXC11O43248 304 aaPredicted RBP19.58■□□□□ 0.72
COL7A1-209ENST00000474432 STX10O60499 249 aa19.58■□□□□ 0.72
COL7A1-209ENST00000474432 LRP3O75074 770 aa19.58■□□□□ 0.72
COL7A1-209ENST00000474432 RPP40O75818 363 aaKnown RBP19.58■□□□□ 0.72
COL7A1-209ENST00000474432 KIR2DL1P43626 348 aaPredicted RBP19.58■□□□□ 0.72
COL7A1-209ENST00000474432 SEC13P55735 322 aa19.58■□□□□ 0.72
COL7A1-209ENST00000474432 PUM1Q14671 1186 aaKnown RBP eCLIP19.58■□□□□ 0.72
COL7A1-209ENST00000474432 C2orf27AQ580R0 203 aa19.58■□□□□ 0.72
COL7A1-209ENST00000474432 DCAF17Q5H9S7 520 aaPredicted RBP19.58■□□□□ 0.72
COL7A1-209ENST00000474432 EMC10Q5UCC4 262 aa19.58■□□□□ 0.72
COL7A1-209ENST00000474432 ARHGAP17Q68EM7 881 aa19.58■□□□□ 0.72
COL7A1-209ENST00000474432 CEP68Q76N32 757 aa19.58■□□□□ 0.72
COL7A1-209ENST00000474432 CCDC186Q7Z3E2 898 aa19.58■□□□□ 0.72
COL7A1-209ENST00000474432 KBTBD6Q86V97 674 aa19.58■□□□□ 0.72
COL7A1-209ENST00000474432 UBR7Q8N806 425 aa19.58■□□□□ 0.72
COL7A1-209ENST00000474432 CCDC150Q8NCX0 1101 aa19.58■□□□□ 0.72
COL7A1-209ENST00000474432 ACDQ96AP0 544 aa19.58■□□□□ 0.72
COL7A1-209ENST00000474432 TMEM176AQ96HP8 235 aa19.58■□□□□ 0.72
COL7A1-209ENST00000474432 HEXIM2Q96MH2 286 aaKnown RBP19.58■□□□□ 0.72
COL7A1-209ENST00000474432 PNKPQ96T60 521 aa19.58■□□□□ 0.72
COL7A1-209ENST00000474432 TSG101Q99816 390 aa19.58■□□□□ 0.72
COL7A1-209ENST00000474432 NUDT5Q9UKK9 219 aa19.58■□□□□ 0.72
COL7A1-209ENST00000474432 USP18Q9UMW8 372 aa19.58■□□□□ 0.72
COL7A1-209ENST00000474432 SH3BP1Q9Y3L3 701 aa19.58■□□□□ 0.72
COL7A1-209ENST00000474432 DYNC1LI1Q9Y6G9 523 aaKnown RBP19.58■□□□□ 0.72
COL7A1-209ENST00000474432 PPP1R3GB7ZBB8 358 aa19.57■□□□□ 0.72
COL7A1-209ENST00000474432 MDM4O15151 490 aa19.57■□□□□ 0.72
COL7A1-209ENST00000474432 AXIN1O15169 862 aa19.57■□□□□ 0.72
COL7A1-209ENST00000474432 KAT7O95251 611 aa19.57■□□□□ 0.72
COL7A1-209ENST00000474432 ADH1CP00326 375 aa19.57■□□□□ 0.72
COL7A1-209ENST00000474432 IRF1P10914 325 aa19.57■□□□□ 0.72
COL7A1-209ENST00000474432 RARGP13631 454 aa19.57■□□□□ 0.72
COL7A1-209ENST00000474432 FOXK2Q01167 660 aa19.57■□□□□ 0.72
COL7A1-209ENST00000474432 TCERG1LQ5VWI1 586 aa19.57■□□□□ 0.72
COL7A1-209ENST00000474432 TTI2Q6NXR4 508 aa19.57■□□□□ 0.72
COL7A1-209ENST00000474432 KLHDC10Q6PID8 442 aa19.57■□□□□ 0.72
COL7A1-209ENST00000474432 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms